RNA id: CI01000339_00040401_00044825.mRNA


Basic Information

Item Value
RNA id CI01000339_00040401_00044825.mRNA
length 3411
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000339_00040401_00044825
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 40156 ~ 45165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAAAGGAGTGCTTCTATTTTTACTGGTAACATTTCAACAGGGCATCTGTATTTTAATTTAAGTACAAGATTTGTGTACTTCATCCTCCACTTTGAACTAATGAACTTTTTAGCAGTTAATACCAGAGACAAAGAGCCTTTCATTGCCATTAAAAAAATGACAAGGAAAACAGAGCAAAATCAGTTAAAACAAACAAAACATGTCAAGTTTGACTGTGATTACAGGAATGAGCTCATCCGAAATGACAAGTAGAGACAGAAAGGTGAAAGACACAGTGAACATAAAACTGTGTACAGGGGAGTTAAAGTGTGGGAGAATTTCAGATAAACACTGGCATAACCTGCATGCCAGAGTCATGCAATCATCAACATCTTGTGGTCCACCACAATACACTGCCAATAACATCTCTCTTTCTTTTTTCCACAGAATGGGACAAAACCAGGTCAAGGAGGGGGAGCCAGGGCAGGACAACAGCTCTGCAGGACCAGAGGAAAAGGGACCAAGCCCAGACCCTGGGGGGGCAAAAGAGGAAGGAAATCCAACCATTGAGACTCATGGTGTCGGGACAGATGAGGAGAAAGCAGCCGATGGAAGGTTGGATGGAGGCCCAGGCAGGGAGTTACCATCACCTACACCAGAGCACAGTTTGGATTTTCATAAGGTGTGTGCTCCCACGGATGGGGGGGTTGTGGAGGGAGGGGATGGCGAGAAAGTGGGAGGAAGAAAGAGTAGCGAGGAAGGCAGAGCTGAACTGCTGGCTCCACAGCAGCTGAATGGAATCACACAGTCTAACAGCTGCCTGCAAGGCACATGGGAGGCTGGTGAACCTGATCACGAGAGAAAAGACTTGAAGAGTATGCTAGAAGACTATCTTAAACATCAGGAAAACCTCGGGTGCGACTTTCCTGGTAAAGACAAAGTTGAAAGTGCTCACAAAGGAGAAAACAAGAGTAAGAATTGTGCTTCATATGTAAAGGACGAAATGGAGTCTGTTTTTGGAGATGACGACAAGCTAAAGTGCCAGGAAGGGGACAGAAAACTAGATGTTGATGCTGCCTGTGATATTAGCTTAACAAATACAGGGCCTACTTTGGAGATTCTGGAAAGGAAGGACATTTCGAAATCAAGTGGTGGGGACGCCAACACCAACGTTCACTTTACGGTTCAAGACAAAGCTTTGCTCATTACGGAAAACGTAGACTTGAAGACCAGCATGACTGAATCACAAAACAAGAGGCCGTTTAACAAGCCCAGCACATCAAACCCCGTGATGAACTCACAAATGGAGACATCAAAGGACATTACTGAGGCAATTCAGCAAGTCAAAGAAGGAATAAGGGAGAAGCCGCCAGAGAATCCAGATAAGGTTGTAAAAGAAACCTTAAACACTGAACATTCTTCCCCGAAGAACGTCGAAACCCAGGGGCGGTCAATGAAGGTTGTCAGCGAAGCCAGAGAAAACGTTACATGGTGTCAGCCAACAGATGATGTCATGAAGACCAGATTTACTAGTTCATGGCTGGCAGGTGCGGATTTACAAAAAAAAGCTGTGAGCCTAGAACGAGCGCAGAGCCCAGAGGACCTCAGCCCCTTAGAAGTGGCATCCAAGTCATCTCAGGGTCACGCTGAGAGCCATCGGCAAATATCTGCAGGCGAATTCACACAGGATGAGCTTCAGAAAGAAAGGCAATTTAATGTGTCAGACTTGGAGAGCCCTAGGACAAAGGAACCTTCACTTGAGAGATCACCCGCTGGAGGTCATAAAAATAAAGATGGCATAAGAGAGACTGAAGAAAGTGAAAATCTGGAATCTGCTTCAAAGGGCCTCTATCGTTCCCATGCAAAGAAAACCGAGATAAAAGATCTTTCTCTGCGTGGAACAGAAACGGAAGAGGGTTGTTTTGTGACATCTAATATTGCCAGTGTAAGTATGCTGGCTGAAAACAATCCCTTGCTACAAAGCTATGAAGATGAGAAATGTATTACATTCTCTGAAGCCATTACGGATTCATACCCCCCTTCTAAATCTGATGTTCAAGTTATGCAAAAAGATGAAAAAGAGGATTCCCCTCTTTCAGCAAAGGCCAAAGAACACAGAGAGATAAGTCTAGAGTGGTTTCTGGCTGAAACGAGTCCATATGCAGTGATACAAACCTTTCCAGAGACAGTGAAGGATACTACTCATAGGATGGATCCAGAAAGTACATCTTCTTTAAGCGCAGTGATTGATGTAGAAGATGCTACTAAACAGCAGAGAACAGAGGGAGATGCTAACGCTAACTTAGGCGACTTGACATCATCAGAGAGAGACAAGGTCAGCAAGTCTAATCAGAATACCATCAGCTCAAAAACGGACGTGCGTAAGGAAACATCTGCAAATAGTTCCATCTCTGAGCTCATTGCTGGTCCTGAGACAGCTTCAAGTCCCATAGATGACAGGCTAGGCATGGACAAGAAAACAGAAGTCACTCTGTCTGGTTCTTCTCAACTCCAAGGGCAATGTTTTTTGAATATTTTAACAAATGCACCAACCCATTCCGTTTTAAGCCAGACAGATGTATATGATCAGGTCCAGAATGGTTGTACTGCATTAGTAGACAGGACAGCAAACACATCTGCTGCACAAGATGTGCTACATTCCTCCTCCATGTGCAACCTAATAAGTATGCAAGCTAACGAGAAACAAGATAAAGAGCAGAACAAGCTGTCGACACAAGCAAATTTTCGTGTTTTAGAGGAGAAACATTTAAGCCAGCTTGACCAAAAGCTTGCGATAGAAAGCAACCTGACCACCATCATGGAAACACCGCAGGGTGCACAGAAAAGACATGTTTCAGATATGATAAAGGAAACTATTGAGTTGCAGAAGAAGATGAAGGAGTGGACCAAGCCGGCTGATGTCCGGGTTGATCTGACCTTAGATCCAACACAGTCTGTGAAAGTTTCACAAATGAAAGCAGCATTTGATCCACCAAAGAAATCACCTGACAAAGCACTAGAGAGAAAACCTTCAGTGAGAAAAGGTGTGGATTATCGTGTCATATCTGAGAGGGTGGATGCATTATAAACTATCTTAATACAATGTGATGTCTGTTTGGAGGGTTTCTTAAAGGTGCACTCAGTAATTTACTTGTTAAAGTTTTACACAGAGAAATGAACAACTTTTGTTAAATATCATTGAAATGATGATACACTTGAGATGAAGACTCAAGTCAAGTCATATCAGTCTTTTAGATAAAGTTGTTTTCTACATTGAGTCTTGGAGTGGGTCAACGTTTTATGGGTGCTGCCATGTTGACGTCACACAATTGGTCTTGTCATACAGTTGACAGGGTCTCTAATAATGTGTTTAATGTAAAACAGAGCTGAGATTAAGGATAAAAGTGGGGCATTTTTTAAAAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551564 lncRNA upstream 2561 36370 ~ 37595 (+) True G480644
TU551579 lncRNA downstream 114827 159992 ~ 160961 (+) True G480657
TU551582 lncRNA downstream 116640 161805 ~ 162032 (+) True G480658
TU551586 lncRNA downstream 131382 176547 ~ 176901 (+) True G480662
TU551623 lncRNA downstream 285143 330308 ~ 330724 (+) True G480699
TU551624 lncRNA downstream 289152 334317 ~ 334711 (+) True G480700
CI01000339_00014867_00022451.mRNA mRNA upstream 17498 13126 ~ 22658 (+) True CI01000339_00014867_00022451
CI01000339_00069245_00092819.mRNA mRNA downstream 24080 69245 ~ 93266 (+) False CI01000339_00069245_00092819
CI01000339_00095291_00096742.mRNA mRNA downstream 50126 95291 ~ 97825 (+) True CI01000339_00095291_00096742
CI01000339_00104544_00105929.mRNA mRNA downstream 58526 103691 ~ 106266 (+) True CI01000339_00104544_00105929
CI01000339_00112995_00113192.mRNA mRNA downstream 67446 112611 ~ 113192 (+) True CI01000339_00112995_00113192
CI01000339_00117608_00135474.mRNA mRNA downstream 72443 117608 ~ 135672 (+) True CI01000339_00117608_00135474
TU551587 other downstream 132503 177668 ~ 177983 (+) True G480663
TU551697 other downstream 589249 634414 ~ 640377 (+) True G480761
TU552290 other downstream 1244156 1289321 ~ 1290733 (+) True G481321
TU552307 other downstream 1529369 1574534 ~ 1574698 (+) True G481338
TU552822 other downstream 2151435 2196600 ~ 2198750 (+) False CI01000339_02196706_02198050

Expression Profile