RNA id: TU551582


Basic Information

Item Value
RNA id TU551582
length 228
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G480658
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 161805 ~ 162032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCCAAGTTGGAGTCGAAGGAGTCTCGAACCCGAGGCTTGGCTTGAGCTCTGGGCAGTCAACTAAGAGTAGTTCAGCAATATAAGTACAGAAGACTTAAAGGATTTAATCCCTCTCCCCCCCAAAGATGAGCAGAATATTTTTTGCTGTTGCCGTATTGGGGGAAAAAATAAGGCAGCTTGTGTGGTGAATTTCCTGTGGGAGCTAAAAGAGAAAACGAAAGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551579 lncRNA upstream 844 159992 ~ 160961 (+) True G480657
TU551546 lncRNA upstream 11969 43834 ~ 149836 (+) True G480630
TU551544 lncRNA upstream 84540 43834 ~ 77265 (+) False G480630
TU551541 lncRNA upstream 92357 43834 ~ 43951 (+) False G480630
TU551564 lncRNA upstream 124210 36370 ~ 37595 (+) True G480644
TU551586 lncRNA downstream 14515 176547 ~ 176901 (+) True G480662
TU551623 lncRNA downstream 168276 330308 ~ 330724 (+) True G480699
TU551624 lncRNA downstream 172285 334317 ~ 334711 (+) True G480700
TU551636 lncRNA downstream 213377 375409 ~ 383570 (+) True G480708
TU551641 lncRNA downstream 223477 385509 ~ 386379 (+) False G480711
CI01000339_00117608_00135474.mRNA mRNA upstream 26133 117608 ~ 135672 (+) True CI01000339_00117608_00135474
CI01000339_00112995_00113192.mRNA mRNA upstream 48613 112611 ~ 113192 (+) True CI01000339_00112995_00113192
CI01000339_00104544_00105929.mRNA mRNA upstream 55539 103691 ~ 106266 (+) True CI01000339_00104544_00105929
CI01000339_00095291_00096742.mRNA mRNA upstream 63980 95291 ~ 97825 (+) True CI01000339_00095291_00096742
CI01000339_00069245_00092819.mRNA mRNA upstream 68539 69245 ~ 93266 (+) False CI01000339_00069245_00092819
CI01000339_00188554_00189543.mRNA mRNA downstream 26365 188397 ~ 190178 (+) True CI01000339_00188554_00189543
CI01000339_00210534_00211598.mRNA mRNA downstream 48027 210059 ~ 211601 (+) True CI01000339_00210534_00211598
CI01000339_00214390_00215412.mRNA mRNA downstream 51974 214006 ~ 215884 (+) True CI01000339_00214390_00215412
CI01000339_00225794_00226825.mRNA mRNA downstream 62596 224628 ~ 226961 (+) True CI01000339_00225794_00226825
CI01000339_00336428_00365467.mRNA mRNA downstream 173851 335883 ~ 366764 (+) True CI01000339_00336428_00365467
TU551542 other upstream 84213 43834 ~ 77592 (+) False G480630
TU551540 other upstream 84335 43834 ~ 77470 (+) False G480630
TU551587 other downstream 15636 177668 ~ 177983 (+) True G480663
TU551697 other downstream 472382 634414 ~ 640377 (+) True G480761
TU552290 other downstream 1127289 1289321 ~ 1290733 (+) True G481321
TU552307 other downstream 1412502 1574534 ~ 1574698 (+) True G481338
TU552822 other downstream 2034568 2196600 ~ 2198750 (+) False CI01000339_02196706_02198050

Expression Profile