G480708


Basic Information

Item Value
gene id G480708
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 375409 ~ 383570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU551636
TTTCTGGAACTTTAAATAGTTGTACAGTCCAATAACCCATGGGAAAACAAATGCATACATTAAAAAAAGTTCATAACCCCATTTCATAAACTGCAATCTCTGCAAAATTAAACCTTATTATAATCCTTATTATTTTAATACGTCATCTTGCACTCTCTTTCAGTCTCTGAATTCTATTGCCTTAATGTAGTAACATCCAACTATACAATCTATTTCTCAGCAGTTCATGCTTCATCAAGTCCACAGTCTTATTTCAGCCCATTCAGGAACAACTGAACATTGATATGAAAAATGTAACCAGCAAACCAATAAGAATGGATCTGATTCATGGTCTCTGAAGGCATGACTAGCTCTTTATCAGATTGTGGCCACAGAAGCAATAATACATTCAAATGTAATTTACTAGGCCAAGATCTCTGGAAAGCTTTCCTCTTCATTTAGTCAAAACTGTTACCTAGCTTAGCTCTAGCGTTCCAGGCCACATGATCTGCCTAATGAATACGGATTTCTGGGAAAGCGCTATCAAAGGCAATTAACTCAATTGGCTCTAGCTGCTAACCAAAGCTCCCTATAGAGTAAACAGCCCAGCTGTAGAGCAACAGATTGTTACACATTTACAATTTCAGTTTCAGCTCCACCACAACTGCATTAGGAACAAAAACAAAGAAAAAGGCAGGAAAGAAGATAAGAATGGATTGTCTTCTCTTTCAAAACACCAAAACGTTAGATGATCTGATCCATCAACGCTTCTTAAAAGGACACGGAGCAGTTAACGGGACTGTCGCCCTCTCATTGGAGTTTAACAAGCAGGGAGTATTCATGCCCTGTGATGATCTGCACAAAATGTACTAGCATTTTTTTCTCCACATGAATCCCTGACATGCATATTTAATACAAAACCACCATTTCACCTTTTCCAGTGTATCCCCACATGTCCTACTTTCCCCAACAGCTTCGTTGAAGAAATAAGGACACGGTTTGGGATCCCAGAAAATCTTTCCACGCTCTCTCAGGGCACATGCCCCACCTTTACCATGAAACCATGCTGTAAAGGCAAGGTAAAGAGAAAAGAGACGACAGGCAAGAGGGAGGTGGACGTGGAGTTTGGTCCTTTGAGATTCCTCGGTGCTGCATATACATCTTAAGACGCCTGTCCAGGCGCTCATCCTGTTCCTCCATCAGGCTCCGGGGGTCCCCGCTGTCCCCATAAGAGGGTCGGCCCCTTCTATGGGCTCCTGAGTGGGGGTCTGGTTGTTCGGCTCAGCCGTGATGACGATGGTGTTCTCGTCCACCAGCTCGCAGGTGGGATTGGCGAAGGCAGAGAGAGGAAGAGTGATGCGATGCATCTCGCGTTCGTAAACTCGCTGTTCGTGCTGTTTCTTGAGGTCACGACCCCGTTTGTAGAAGTATCCCATCGTGATGCCACCTCCAAGTAGGATGATAATGGCCATCATGAAGACGGCGAGAACATAACCAAGAGTCCCGAGGTCTTTCTTTTTCTTAGGTCCACTCCTGGCCTGCTGGAGCACTCCCTTCACGGGCTGCACTGCTGCACCCTCCACCTGCGAGGGGAAGGAGTTTTTGGATTCAAAGGTCTCCACCATCCTTGGGGTGAGTCCCTGAGTGGGGACAGACTTTTCTGGAGCTGTGGCTTCTGTGGAGTTTTGCTCTTGGCATATCTTAATATCACATGCTTCTTTTCTGGTTTCTCCATTGGACCCAGAGACATAGCACCAGGGCTTCTCTGAACCATCTGGGTTACGACAGAAATTGTGATCTTCAACATCTGTCTGTGGGTCTTTAAACTTCAAGTTTAGACTCTTCCAGTTGAGGCAAATGTTCCCTGTGGATGTCTTCTGTTGCATTCCCCTGTAGCTCTCGCCATTAGATGTTATACACTCTTCAACAACAGACAAGCAGCTCACCAAACCAGAGCTCAGCAGGGGCACAAAGTAAAGCAGTCGAAACATTTTTATTCGTCGATGTTATTAACAACAGGAACAATTATTATTCATGACGACTTAAAACCGCTCTGTCTTAATGGAAAAGCCTGTGGTGAATCGAGCCACACTGCTCTCCAAACACACTGCAGTCGTGCTGTTGTTTTGGGCTCTGACTCTGAGCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU551636 True 2128 lncRNA 0.45 6 375409 383570

Neighbor

gene id symbol gene type direction distance location
CI01000339_00336428_00365467 LIMK2 coding upstream 8645 335883 ~ 366764 (+)
CI01000339_00225794_00226825 NA coding upstream 148448 224628 ~ 226961 (+)
CI01000339_00214390_00215412 NA coding upstream 159525 214006 ~ 215884 (+)
CI01000339_00210534_00211598 NA coding upstream 163808 210059 ~ 211601 (+)
CI01000339_00188554_00189543 NA coding upstream 185231 188397 ~ 190178 (+)
CI01000339_00405927_00407508 NA coding downstream 22312 405882 ~ 408230 (+)
CI01000339_00531202_00532113 HS3ST1L2 coding downstream 146868 530438 ~ 532470 (+)
CI01000339_00541568_00553834 CDS2 coding downstream 157998 541568 ~ 553932 (+)
CI01000339_00563492_00576878 ARHGAP25 coding downstream 179922 563492 ~ 578031 (+)
CI01000339_00585149_00589325 BMP10 coding downstream 201389 584959 ~ 590077 (+)
G480700 NA non-coding upstream 40698 334317 ~ 334711 (+)
G480699 NA non-coding upstream 44685 330308 ~ 330724 (+)
G480662 NA non-coding upstream 198508 176547 ~ 176901 (+)
G480658 NA non-coding upstream 213377 161805 ~ 162032 (+)
G480657 NA non-coding upstream 214448 159992 ~ 160961 (+)
G480711 NA non-coding downstream 1939 385509 ~ 386481 (+)
G480721 NA non-coding downstream 19228 402798 ~ 403543 (+)
G480690 NA non-coding downstream 25619 409189 ~ 409969 (+)
G480688 NA non-coding downstream 30394 413964 ~ 414400 (+)
G480734 NA non-coding downstream 65970 449540 ~ 450224 (+)
G480663 NA other upstream 197426 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 297817 69245 ~ 93266 (+)
G480761 NA other downstream 250844 634414 ~ 643423 (+)
G481321 NA other downstream 905751 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1190964 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1813030 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 2437190 2820576 ~ 2823479 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030976 pik3ip1 coding NC_007116.7 CM002889.2 20866572 ~ 20879527 (-)