CI01000339_00225794_00226825


Basic Information

Item Value
gene id CI01000339_00225794_00226825
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 224628 ~ 226961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00225794_00226825.mRNA
CCATAAAAAAATCCTGGAGGCGTCACTGTGACGTACCATCCTCTCACATAAAAGTACACGACCGTTTTCATTCGGTAGGTAGTCCATCGCACAATCCACCTCTCACAGTTAGCTAAGCAATGACACAAAATACACCTCATAGGCGCCCACGCCCCAAAATTTCAGAACTGCAGCTTAAAAGGCTATGCAGCTGTGTGTACACATAAAAAAAGGAAGTATACTTTGGGCAACGGCATTGTGAGGCACTTTGTGAGGTAAGTTATTCTTTAGATGTCACTCAAAAGCCAGTACTAACTAGTACTATTTCAGTGTACTAATTTAAATAGTACATTGGTTTAATTTATCAACACAAGTCATGTTTAACGTGAGAGTTTCATCCTTACATCTACTATAATTCAATATATTGTTAGTCCTTGAGATTCTTCATGTATGTGAATTAGATTAGCATGGAATGTTCATGTGCCTTAATGTTCTGGTGGTAGAACTCTTGTTCATCGTGTCAGAGAGGTTCTGGGTTCTAATCCTCCCTCATATAGTTTTTTTTTTATTATTATTAAAAACAAAGGTGTTCATCAGTGATTGTGTATCAAGAGCATGGACATGTTTGTGTGCTTTTTGTTTTGTGATTTCACCGGAACGAATAGATTGTCTCCGCAACTGTGTTAAGCGATAGATTGAAGCGCTCGTCTGAGTGAAGTCTGTGCTCGAGCGCCAAGAGAACAGTTGCGCCACTGACAGTGGCAACGAGCACTCAGTGAGATTTCAAAAACGACACATTCCAGCGCCAGATTGCCTCTTATTTAACACAAACAAATGAATTGCTAATCATTGCTAGTCAAATGGAGATGTAAATTTTGTATTAGGTATATCCGTGCAGCGAGATGTTTCAAAAAGTGGCAGAGACAATTTTGACTCATTTCAGTAGGCCTATACCTAAAGTAACCTGATGAAATGATGGGAAAGGCAGTTGTAATTATTTGCAAATTATTATGTTTTTAATAGGAGACTTTTGCATCCCTTGTGTGGTACTAGTGTCATGATGTTTTTGCTCAGCCAATGCATTAATTTTTAGAAATATGCAAAATTACTACTTTAAATATATTTGGATATATTTTTGTTGTTTTCATTACAGAACTCTACTTCCTGTTTAGTTCTAACAAGACATAATGGATCCAGCTCTAGAAACAGATCACGACTACAGTGATATTGAAAATGAGCTTAAAAATCACGCAAAAAACATTCCTGTGGATTTACCTGTTGGATACTGCAAGGAAGCAGCATGTGTAATCACAGTTATTCTTAATGTGATCATATTCCTTCTTGGCATCGTTGGAAATGGTGCGGTGATCTGGATTACTGGTTTTAAGATGAAGAAGTCAGTGAACACCACCTGGTACCTGAGCCTGGCTTTGTCTGACTTCATTTTCTGCGCTACTCTCCCTTTCATCATTAGCAGAATAGTTACGGATGACTGGATCTTTGGGCTCTTCATGTGCAAGTTCACCTCTTTTGTTATGACCATCAATATGTACAGCAGCATTTTCATCCTGGTCATCATTAGTGTGGATCGCTGCATCATAGTCAAGTTTCCTGTCTGGGCCCAAAATCGACGCACTATAAAGAAAGCTTCTTTAGTTGTTATGATGGTTTGGTTTGTGTCTGCTTTGCTTAGCATTCCACCTGCCAAATTTAGAGATATTACAGATATTACACATGACTCACGTACGGTCAAATGTTATAACAACTATAAAGATCACCACAGTACCATTGTGTACACACGCTTTACTTTTGGGTTTTTAATTCCGTTCCTGACCATTTCCACCTGTTACTCCGTCCTGATCTGTAAACTTAGAGAAAACCAAGTTTCCAAACTCACCAAGCCGTACAAGATCATGACATTACTGATTACTACTTTTTTTGTCTGTTGGTTGCCATTTCACATTACTTCTATTCTAGAGGTGGGCAAAACTAAGCATGATCCTGTCTTTCACACGGCCCAACAAATATCTGCAGCCCTTGCCACTGCAAACAGCTTTATAAACCCATTCCTCTATGCATTCATGGCCAAGGATTTGAAGAAGAAATGCTATTCCTTCCTGTCAAAGATTGAGAGCGCCTTTGATGAGGAGACCCGGAGCACTTTCCAAAGAACTACCAATACCAATTCTGTGGATAACAGACTTTCCACTGCTGTCTGAAATTTTAAAACAATTATTGGACAAAAGATATTTTTCTTCATTCTCTTCCACGTCGGACTGGAGAGTGCTGGCCTATAGAAAAGATGGAACATTAACAAGTTGTACAATTGTTTGTCTGTTGCATGAAATGTCTAGA

Function

NR:

description
Chemokine receptor-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00225794_00226825.mRNA True 2334 mRNA 0.39 1 224628 226961

Neighbor

gene id symbol gene type direction distance location
CI01000339_00214390_00215412 NA coding upstream 8744 214006 ~ 215884 (+)
CI01000339_00210534_00211598 NA coding upstream 13027 210059 ~ 211601 (+)
CI01000339_00188554_00189543 NA coding upstream 34450 188397 ~ 190178 (+)
CI01000339_00117608_00135474 SART3 coding upstream 88956 117608 ~ 135672 (+)
CI01000339_00112995_00113192 NA coding upstream 111436 112611 ~ 113192 (+)
CI01000339_00336428_00365467 LIMK2 coding downstream 108922 335883 ~ 366764 (+)
CI01000339_00405927_00407508 NA coding downstream 178921 405882 ~ 408230 (+)
CI01000339_00531202_00532113 HS3ST1L2 coding downstream 303477 530438 ~ 532470 (+)
CI01000339_00541568_00553834 CDS2 coding downstream 314607 541568 ~ 553932 (+)
CI01000339_00563492_00576878 ARHGAP25 coding downstream 336531 563492 ~ 578031 (+)
G480662 NA non-coding upstream 47727 176547 ~ 176901 (+)
G480658 NA non-coding upstream 62596 161805 ~ 162032 (+)
G480657 NA non-coding upstream 63667 159992 ~ 160961 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA non-coding upstream 74792 69245 ~ 93266 (+)
G480644 NA non-coding upstream 187033 36370 ~ 37595 (+)
G480699 NA non-coding downstream 103347 330308 ~ 330724 (+)
G480700 NA non-coding downstream 107356 334317 ~ 334711 (+)
G480708 NA non-coding downstream 148448 375409 ~ 383570 (+)
G480711 NA non-coding downstream 158548 385509 ~ 386481 (+)
G480721 NA non-coding downstream 175837 402798 ~ 403543 (+)
G480663 NA other upstream 46645 177668 ~ 177983 (+)
G480761 NA other downstream 407453 634414 ~ 643423 (+)
G481321 NA other downstream 1062360 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1347573 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1969639 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 2593799 2820576 ~ 2823479 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029995 cmklrl2 coding NC_007116.7 CM002889.2 20613466 ~ 20614431 (+)