CI01000339_02555004_02620598 (OSBP2)


Basic Information

Item Value
gene id CI01000339_02555004_02620598
gene name OSBP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2555004 ~ 2620598 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02555004_02620598.mRNA
AGAAGGATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCAGCGAGCGGGACACCAGCTCCGGGCTCCGACACGTACAAAGGCTGGCTCTTTAAATGGACTAACTACATTAAAGGTTACCAGCGCAGATGGTTCGTGCTCAGCAATGGACTGCTGTCCTATTACAGGACGCAGGCGGAGATGGCCCATACGTGTCGTGGCACCATCAACCTGGCCACAGCGCACATCGACACCGAAGACGCCTGCAATATTGTTCTGAGCAGCGGGGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAGAGGCAGAGATGGGTCACAGCACTGGAGCTAGCCAAGGCCAAGGCCATCCGAATGATGAACGATCAGTCCGATGACTCGGCGGACGAGGAGCCCACGTCTCAGTCAGACCACAGTGAGATCCAGGGCACTCTCAAGACTCTGGCCAGTAAGTTGGATGACTTGAGCACATGCAATGACCTGATAGCCAAGCATGGGGCGGCGCTGCAGCGGTCTCTAAGTGAGCTTGAGACCTTACGTGTGCCTCTGGAGGGAGGAGAGAAAATCAAGGCTGTCAATGAGAGAGCCACCCTCTTTCGCATCACCTCCAATGCTATGATCAATGCGTGCCGAGATTTCTTGGACCTGGCAGAGAGCCACAGCCGCAGATGGCAGCGAGTACTTCAGCATGAGCGAGAGCAACGCACCCACCTGGAGGAGACCATCGAGCAGCTAGCCAAGCAGCACAACAGCCTGGAACGAGCCTGGAGAGAGGCTCCTACACACGCCGTCAACACGCCCGATACACCCACCACTGACACGGGAGTGAGTGAAAGGCCCCGGAAAGAGGAAGCGAGTGATGAAGATGAGGATACAGAGTATTTTGATGCCATGGAGGACTCCCCTGCCTTTATAACAGTGACTGCCACGGACCCCTCTCAACACAGGCGTTCTCAGAGTAATCTCAGTGGTGCTAGCGGAGGACAGCCCAGTGACTGGAACCAGGAAGACAATTGTTCTGTGAGCAGTAATGATTTTTCAGGTAAAGAGTTGCAGCCTCATAGGAAGAGGCGGACCCAGATCCCAGAGAAGCCCAACTATTCACTCAATCTGTGGAGCATCATGAAGAATTGCATTGGCAAAGAGCTCTCTAAGATCCCAATGCCTGTGAACTTCAACGAGCCCCTATCCATGCTGCAGCGCTTGACAGAGGATCTGGAGTACTACGAGCTGCTGGATAAGGCGGCGCGCTGTGAGAACTCTCTGGAGCAGATGTGTCTGGTCGCAGCCTTCTCCGTCTCCTCGTACTCCACCACAGTGCATCGGACGGCCAAGCCCTTCAACCCTCTGCTGGGAGAGACCTATGAACTGGACCGCCTAGAAGAATTTGGCTACCGTTCCCTCTGTGAACAGGTCAGTCATCATCCGCCGGCAGCCGCTCATCATGTGATGTCACAGCGAGGCTGGACCCTGTGGCAGGAAATCACCATCGCTAGCAAATTCCGTGGCAAATACCTCTCCATCATGCCTCTGGGTGCGATCCACCTGCAGTTTCACGCGAGTGGAAACCACTATGTGTGGCGTAAAGTCACCTCCACCGTTCACAACATCATCGTTGGCAAACTGTGGATTGATCAGTCAGGAGATATTGATATAGTCAACCACAGGACCAAAGAGACCTGTCAGCTCAAGTTCTCTCCCTACAGTTACTTTTCAAGAGAAGTCCCACGAAAGGTCACAGGGGTGGTGATGGATAGTGATGGCCAGGCCCACTACATCCTGTCAGGCACATGGGACGATAAGATGGAGAGTGCCAAGATCGTGCAGAGTAGCAGAGGAAGCAGCAGCTCTGAGGGCAAACAGAAGACGGTCTATCAGACTCTCACACCCAAACTGCTGTGGAAGAAATACCCTCTACCAGAGAATGCTGAGAACATGTACCATTTCTCCTCTCTGGCTTTGACCCTGAACGAGGAAGAGGAGGGTGTGTGTTTGACGGACAGCAGGCTGAGGCCGGACCAGCGGCTGATGGAAGCGGGACGCTGGGACGAGGCCAACGCAGAGAAACAGAGACTAGAGGAGAAGCAGAGAGCTACGAGGAGGAGGAGAGAAGCTGAGGCCTCTGAGGCCATAGATGAAGGACGAGACTTTGAGGGCTACAGGCCACTGTGGTTCCACCAGAGGACGGATGAATTGACAGGAGAGACTATCTACGTTTATAAGGGGGGTTACTGGGAGGCCAAAGAAAGACAGAACTGGAATATG

Function

symbol description
osbp2 Enables cholesterol binding activity. Predicted to be involved in sterol transport. Predicted to act upstream of or within spermatid development. Predicted to be located in apical dendrite. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Biomarker of cholangiocarcinoma.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K20462 OSBP2, ORP4; oxysterol-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02555004_02620598.mRNA True 2268 mRNA 0.54 14 2555004 2620598

Neighbor

gene id symbol gene type direction distance location
CI01000339_02528763_02532854 TRMT2A coding downstream 21705 2528570 ~ 2533299 (-)
CI01000339_02511031_02517700 TIA1L, TIA1 coding downstream 37304 2510990 ~ 2517700 (-)
CI01000339_02391907_02394440 ZNF703 coding downstream 159372 2391780 ~ 2395632 (-)
CI01000339_02342727_02347147 NA coding downstream 207536 2342543 ~ 2347468 (-)
CI01000339_02327279_02330567 PHF23A coding downstream 224357 2327016 ~ 2330647 (-)
CI01000339_02625582_02642219 RASL10A coding upstream 4188 2624786 ~ 2642219 (-)
CI01000339_02649586_02672148 AP1B1 coding upstream 28698 2649296 ~ 2672148 (-)
CI01000339_02678291_02691492 GAS2L1 coding upstream 57613 2678211 ~ 2691579 (-)
CI01000339_02706842_02710233 GAS2L1 coding upstream 85905 2706503 ~ 2711597 (-)
CI01000339_02719694_02722806 NA coding upstream 98454 2719052 ~ 2722806 (-)
G482924 NA non-coding downstream 13006 2541426 ~ 2541998 (-)
G482873 NA non-coding downstream 31793 2522690 ~ 2523211 (-)
G482883 NA non-coding downstream 82893 2466363 ~ 2472111 (-)
G482901 NA non-coding downstream 89254 2464206 ~ 2465750 (-)
G482895 NA non-coding downstream 111310 2443472 ~ 2443694 (-)
G482976 NA non-coding upstream 289680 2910278 ~ 2910491 (-)
G482983 NA non-coding upstream 309755 2930353 ~ 2937992 (-)
G482982 NA non-coding upstream 318221 2938819 ~ 2939684 (-)
G482987 NA non-coding upstream 320256 2940854 ~ 2941183 (-)
G482988 NA non-coding upstream 322818 2943416 ~ 2943646 (-)
CI01000339_01988812_02024891 NA other downstream 557559 1988537 ~ 2025183 (-)
G481662 NA other downstream 821985 1723770 ~ 1733019 (-)
G481610 NA other downstream 981042 1571537 ~ 1573962 (-)
G481157 NA other downstream 1438856 1114129 ~ 1116148 (-)
CI01000339_00932339_00951205 SMARCA1 other downstream 1601570 931680 ~ 951205 (-)
G483104 NA other upstream 773510 3394108 ~ 3401228 (-)
G483199 NA other upstream 1157293 3777891 ~ 3778551 (-)
G483285 NA other upstream 1504660 4125258 ~ 4170502 (-)
G483509 NA other upstream 1992254 4612852 ~ 4613318 (-)
G483512 NA other upstream 1997514 4618112 ~ 4618725 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015667 NA coding CM030132.1 CM030132.1 15792513 ~ 15814359 (-)