Gene
RNA
| Item | Value |
|---|---|
| gene id | G484139 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000339 |
| NCBI id | null |
| chromosome length | 8057057 |
| location | 6946386 ~ 6966146 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU555509 | True | 1145 | TUCP | 0.50 | 9 | 6946386 | 6966146 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000339_06922495_06931270 | NA | coding | upstream | 15116 | 6922495 ~ 6931270 (+) |
| CI01000339_06908921_06911275 | TESCB, TESC | coding | upstream | 34598 | 6908921 ~ 6911788 (+) |
| CI01000339_06874834_06879285 | ZMAT5 | coding | upstream | 66383 | 6874834 ~ 6880003 (+) |
| CI01000339_06839905_06863576 | SCAI | coding | upstream | 82153 | 6839905 ~ 6864233 (+) |
| CI01000339_06823472_06827590 | PPP6C.L, PPP6C, BRAFLDRAFT_113834 | coding | upstream | 118122 | 6823472 ~ 6828264 (+) |
| CI01000339_06995644_07004684 | NA | coding | downstream | 29498 | 6995644 ~ 7004742 (+) |
| CI01000339_07075443_07080607 | NDOR1 | coding | downstream | 109171 | 7075317 ~ 7080632 (+) |
| CI01000339_07209025_07229708 | NA | coding | downstream | 242726 | 7208872 ~ 7229847 (+) |
| CI01000339_07234668_07235576 | IER5L | coding | downstream | 268330 | 7234476 ~ 7236787 (+) |
| CI01000339_07254028_07258117 | CRAT, CRATA | coding | downstream | 287882 | 7254028 ~ 7258632 (+) |
| G484122 | NA | non-coding | upstream | 7334 | 6938540 ~ 6939052 (+) |
| G484090 | NA | non-coding | upstream | 73083 | 6867204 ~ 6873303 (+) |
| G484092 | NA | non-coding | upstream | 181406 | 6761688 ~ 6764980 (+) |
| G484081 | NA | non-coding | upstream | 202670 | 6740158 ~ 6743716 (+) |
| G483917 | NA | non-coding | upstream | 212208 | 6733770 ~ 6734178 (+) |
| G484129 | NA | non-coding | downstream | 43020 | 7009166 ~ 7011232 (+) |
| G484148 | NA | non-coding | downstream | 54502 | 7020648 ~ 7020999 (+) |
| G484154 | NA | non-coding | downstream | 87999 | 7054145 ~ 7054460 (+) |
| G484169 | NA | non-coding | downstream | 141964 | 7108110 ~ 7108952 (+) |
| G484170 | NA | non-coding | downstream | 144530 | 7110676 ~ 7114036 (+) |
| CI01000339_06041909_06043927 | ATP5L | other | upstream | 902352 | 6041817 ~ 6044034 (+) |
| CI01000339_05599544_05600935 | TIMM8B.S, TIMM8B | other | upstream | 1344125 | 5599544 ~ 5602261 (+) |
| G483672 | NA | other | upstream | 1706602 | 5227323 ~ 5239784 (+) |
| CI01000339_03088452_03091633 | NA | other | upstream | 3856681 | 3088110 ~ 3091633 (+) |
| CI01000339_02821530_02821886 | MRPL41 | other | upstream | 4122493 | 2820576 ~ 2823479 (+) |
| G484172 | NA | other | downstream | 148437 | 7114583 ~ 7115459 (+) |
