CI01000340_09922690_09932467


Basic Information

Item Value
gene id CI01000340_09922690_09932467
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9922389 ~ 9932982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09922690_09932467.mRNA
ACAAAATACTGTGTACAGGGAGGCATAAAAGAGTTATATTTCATAAAAGTTATTCAACTTGAAGGCTGCATTAATCACTAGTATAAAATTATTTTTAATATAACTGCATTAATTTAATATAACTGTTCTATTAATATAACATTATTATTATTATTATTATTATTATTATTATTATTTGTAATATAACTGTATCATACAAGTGTTCAAAGTGCTTTTTTTTTTTTTTTTTTTTAAAGAAAGTCTTTTATTATGACATTATTTTACCGGAAGAATATTCATTCAACACAGAACAGCGGCAGTTATGGTTTGTTGTTGGTTGTTGTCTGTTGTCAGTACGATAGCACAGATGACAGCTTTTTAATGAGATGTAGTAACTTAAAAGCCTTAAGTGAAATCTTTAAACCATTGAAAGCTGCTTTATTAACTTTATTTAAACCAGTTATAGCTCAGGCACCGGCTGTTAGAGAGTGAGCTGATTGACTGAAAGTTATGTATGCTCCAATAAACCACTAAAGATGCAAACGACAAGACCAAAAGCGGGGAAACAGTTGTCTTGTGGTGTTGAAAAGAACCGGGCACGTAAAACACCCATACGCAAATACACTTACCGGGTAGGATATAATTGGAACCGAGGTGGTAGACTTAAAGAGCTGAGGATAAGATCTCATTATTGTAAGGTGGTCTTGAGGAAGACCTTAGGAGCATGGAAAGATGAGTGGTGGCACGCAAGAAAGGAATGGACCCTAAATATAAGGGCAGATTGCCATTATACGTATATGCTGTACAGCAAAATATTTCAAGCCTGGCAGGAGTATGTTGTTGTCCAGAGAGAAGAAAAGAAGAAACTGCAACTTGCAATCAGTTTTGAGACGGACCACAAGCTGCGTTGCATGTGGAACGGTTGGGAGCTGTACCTGGACATGTGTCGCATGAAACGCAGGATGCAAGAAGCAGCAGTACAGCACGAGAGACTCGCTGCACTGAAGTGGGTTTGGACTGTGTGGAACAAAGCACTACAGCACAGGGATGTGGCGTACCATCAGGAAGATCTTGCCTTGCAACACTGGGCTCACACTGTACAGAGCAGAGCATGGCTGAACTGGAGAGACGGGATGAAACATGCCTGTGTTCTGAAAGAGAAGGAGTCCAAAGCTCACCGTCACTATTGTCTTCAGCTTTTAAGACATACACTTCATGGATGGATCAGACACACAGAGAACAGACAGGCTAAGAACAAGGCAACAGCTGTTGCTCAGGATGTATGGCGTGTCTCTGTGCTGGAGAAGTTTTGGCGTCAGTGGTATAATGTGCTGCAATCCAGACATGTTGAGAAAGACAGAGGACAGAGAGCAGAACAACTGGCCCAGCACGGCTCCCAGCGGCTGGCGTTCTCGCACTGGAGACACTGTATCTTTGATTACACAGTTTCACAGACGCGTTTGGGTTTAAAAGGCCTTGCTCTGAACGTCACTCACAGTAAAACTCAACGTCTCAACAATAACATTAGTGTCCAGCATCATCATCACATCTTGCTGGCAAGGTGTTGGAAAGTCTGGCAGCTGCGCTTGGATCAGGCTGAAGACGGAAGTCTGCAACCCCAGATGAGTGTTGCACAAACTCATCACAAGTCACTTGCAATTAATGATGGACTGCACTTTTTTATTTTTGCCTTCAAAATGCTCCTAATATTTTATCACACACAGGAGTTGGAACTACGTGCTGATGCCTGCTTTGCCCATCGTATCTTCCCACAATATGTAAACACTTGGATGGAGTTCACAGCACAACGCACAGAGAAACGAGAGCGGAAAGAAAGAGCTGAACAACATTACAGTCAGAGACGTTTCGAGCAGGCACAGGGTCATGATGGACAGCGGTGTCTGAGAAGAGCCATGGCAGGCTGGCATCAGCTTACAGCTCATTGTTTTTACATGCATGCATGTAGTCGTACCATTTGCAGAATCAATCGATTAACAATCATGTGGAGTGCCGTTACCAGGAGCATCAGCAACAACTGGTCAGTACGTGTGCAGGTGGCTTTGAGAAGATGGAGAGAGCGAAGCATGGAGGTAAAGGTTGAGAGACTGGCGAATGAGATGGCCAACAGACACTACAGTAGAACGCTGGGAAAAAGAACCCTCAACACATGGACCAGTAATATTCACCATCACAAAACATATCAGGTGTTTTGCTCATGGCGGCTGTGGATTGCAGAACGTCAGAGAAAACAGGAGCGTTTGACTGAAGCAGCTCAGTTTTACAGAGATGAACTGTTGAGAGAGGGTGTCACGCACATCCTCACACACACAGCGCACATGGGTGCTTTCTCAACTAATATTGCCCAGCACAGCTATGAACAGAGCTGTCGTCAGCTTCAGGAAGTGGTAAGGCGGTGTGCCGTTCGATGGAAGCAGCGGGCACTATGCAAGCCTGTCAAGGGTAAAACAGTGCCGTCCAAAGTCAGCCACTCCAAGAAGAGTGTGTCTTTTTTTCTGCCAGAAGACCACACCCCCATTCCCACCCCCTCTCCAATCAGGAGCCAAACAGCAGAGCAGAGGCAGAAAGATTCCGTCATCAATCACCTTTGGTCAGTTCGAGCATCTAGATTGCAACCGAGAAGACCAGATGACCTGCTGCAGTCCCCAGCCAGACCTGTGCCACATGACTTCAAGATCATCAGCAGTCCTTCCTTTCCTTCTCCATTACCCTCAGTTCCTTTGACCCACAACCCACTGGACTCACCTGCAATGGTACTACAACCTAAGATCCTCCCATTCAAACCTGGTCCTCCAGAATATATTACGGCTACCGGCCAGGACATACTGCTTCCTCCATCTTCATTTACTGTTTCAGTATCACATGGCAAGCACAAAAGCTTAAGGAATCAGGAGCCTCTACTGCATTCTACTCATTTCACTTCCCACCTTCTCCCAAAACAAGGTGTGTATGAGAGATTACCAGAGCAGGAAGAGGAGAATGAGGAAGATGAAGCAGTGAATGTGGAGAAAACTGAAAATCTCACCAAAGAACTACTAGATATTAGACTGGAAATGCAACGATACCAGCAAGATAGAAAACAGCTACAGTATGTAAATCTGGCTTTCAATGGGATGAATATACAGTGTTTAGAAATATTATTCTAATTATTACAGTTACTGTAATTCATTATTTGTTAGATTTATATACAAATTCATATATTAGTGCTGTCAAATCGATTTAATTATGATTAATCACATCTAACATAAACGTTTGTTTATATATGTGTGTACATACACACACACACACACACATACATTGGCATAATATTTTTGTAAATTCTTTGTTTGTTTTTCTGAAGCGATCCTGCCGTAAAAGTCACCAGTCTCCTGAAATTGAAACCACTACTTTGGACATGCATTTTAAGACTGGAGCTGTTTTTTTTTGTGTTTGGAAAAAAAAATTAAA

Function

NR:

description
LOC560147 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09922690_09932467.mRNA True 3444 mRNA 0.43 19 9922389 9932982

Neighbor

gene id symbol gene type direction distance location
CI01000340_09911298_09920295 NA coding downstream 2094 9911279 ~ 9920295 (-)
CI01000340_09907511_09910003 SIRT4 coding downstream 12386 9907511 ~ 9910003 (-)
CI01000340_09898618_09904814 RFT1 coding downstream 17575 9898618 ~ 9904814 (-)
CI01000340_09882272_09889768 EEFSEC coding downstream 32621 9882103 ~ 9889768 (-)
CI01000340_09847205_09851609 BRAFLDRAFT_215305, ARPC4 coding downstream 70427 9846802 ~ 9851962 (-)
CI01000340_09961043_09968792 SLC2A11A coding upstream 28013 9960995 ~ 9968985 (-)
CI01000340_09985390_09986420 HDHD3 coding upstream 52193 9985175 ~ 9986420 (-)
CI01000340_09987410_09989834 NA coding upstream 54326 9987308 ~ 9991512 (-)
CI01000340_10005818_10020244 NA coding upstream 72710 10005692 ~ 10020244 (-)
CI01000340_10025958_10028902 SRSF3 coding upstream 92674 10025656 ~ 10029589 (-)
G491983 NA non-coding downstream 55036 9867049 ~ 9867353 (-)
G491980 NA non-coding downstream 63844 9858271 ~ 9858545 (-)
G491978 NA non-coding downstream 67085 9854906 ~ 9855304 (-)
G491970 NA non-coding downstream 155815 9765435 ~ 9766574 (-)
G491992 NA non-coding upstream 25164 9958146 ~ 9958381 (-)
G491993 NA non-coding upstream 26762 9959744 ~ 9960010 (-)
G491915 NA non-coding upstream 99338 10032320 ~ 10034890 (-)
G492001 NA non-coding upstream 132547 10065529 ~ 10067185 (-)
G492000 NA non-coding upstream 139050 10072032 ~ 10073240 (-)
G491712 NA other downstream 1122812 8799201 ~ 8799577 (-)
G489511 NA other downstream 3595017 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3701747 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4597245 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 5263328 4598714 ~ 4627447 (-)
CI01000340_10357202_10357606 NA other upstream 424202 10356758 ~ 10359856 (-)
G493109 NA other upstream 1740764 11673746 ~ 11677994 (-)
G493266 NA other upstream 2134195 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2679234 12577435 ~ 12625758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033075 sirt4 coding NC_007117.7 CM002890.2 40877394 ~ 40922971 (-)