CI01000340_09987410_09989834


Basic Information

Item Value
gene id CI01000340_09987410_09989834
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9987308 ~ 9991512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_09987410_09989834.mRNA
AGTTTCAAATAATAATCAAGTAATATTTTAGGCAGAATAGTCATTTAAATGATCTGTTCTTCCTGTGGTTTTAAGGACGAGTGTATAGGTTTGCTTTGATTCCATTTGTGAACATAAGTCAACAGTAAAGACATCTTATAGCAATTATGCATAATAAGCAAACATCTGTATATAATAAACTGTGCCCTTTTATTGGGGTCAGGTCATAAACTTTTGAGTCACAGCATTAAACCATTAAAATGTGTTTTTATAACAAGCTGATGTTTGATAGACCTGGATATCAGCATTTTGTTGTATTTAAAGGGTTATTTGTGACTGACTGTGAAATTTTTGTAACAAAATTAAAGGTTTTCATTTTTCACAATGGAGAAGACCTACTTTATGGCAAACGTACACAATCAGGCTCAGTGAATGCACTTTATGTTATTTGTTTAAACATTTAGCCTACTTTGTTTACCTGCTTAAACTATAACAACTGCAATATGTTTTCTGAACACTGTGCATATTGTGTAAACCGTGTAATATTTAATCTTTCAATTTTGTGTAGCCTATTTGTTGTACCACACCTGCTCTATCAATAGGTGTTGGCAGTGGTAGCTAATGTCATCACAGACAAATCTTTCACAATATCTTTAAGCAACAGTATTAAAAGAAAACTGCTGGCTTCTCGGTTTTACACTCACCATTTCCGAAACCACTATAACAAAAATATAAGACTAGATTTTAGTTTAGACTGGGGGAATAAACATTTGTGCAATTCAATTTTAAACAAAATCTCATAGTTAAAGCAATAAACGTAATAATGTTAGTACAAGTTAGATAAGTTAAGACATTGTTTAACTATCTTTTGAAATGTTAATATAATAAGTTGATAACAGACTGAATGTCTTACTATTATTAGATAAATCAACTAATAGGCCTACACAAAATGTGACATTAATTAATATCATAAAAATCCATTGCAAAACCGTATTGATGTTTGTGCTGTTGTTTTCCCTCCAAAATGGATGCCAATTCCTTTATGTTTGTTCAAAAATGCGTGAAAAGTGATATTGAGAATACGGGGGAAAACCTATAAGTTGATTAGCTCACAAAACTCAAACAGATATTTTATTGAAATATATTCATTGAAATATTCACGTTCTTTAATTGTGTTGACACAGTTCCACCTTTCAGTTCATTAACGACCAGTCTCACTATATGTTAGTGTGGTTTTATTGTTTTCACTTGTTTACACAACACCTACAACACAAATATTATAAGACTGGAATTAAATTTACAAAAATATTCTAATTTAAGAAGGTTTTGAACGAGAGAAAAATGCTAGTAAAAAATAGCTACTGAGATATAGACCTTGTGACACCTTTTTCCCCGTTTGACAACTAGCCCCGGACTCCCGTATATTAAGAAATGTATGATTGCAAAGAAGACAATATTATGCATTCTTTCAACAAATACCTTAGCAGCATGGCGTACACGTTGAACTGAAGTATCTCATCCACTAGAGGGCGCTACCGTAACTGTGATGCTGTAACGCCAGTAGAAGAAGACGGTCACGCCAGAATTTCAACCCTACGCAGCAGCATGTGAATTTGTTTGATTTCCTGCCTGTCAGCCATATCGGTCATTTACTTGTTTATATTTCACTGATGTTTGTAACATTTATTTCTGGACGAAAATGACCACGCAAGCTGTACGTCTTTTCCGTAGAATGGATGGTCTGTTAGCTGTGTACAAACCGCAGGGAGTTCACTGGAAACTTGTTCGTGACACTATAGAGACCAATTTACTGAAAGAGCTGAACTCCTGTCCTCCACCAGCTCCTCAGCTTGCAGTGCAGTTTCAGCTTCTTTCAAGTGGAGAGAACAACGGCTCTAAAGATCTCATATTGTCACCCTCTATGCTTCCTACTCTTGCTGACCATCCTCTAGTGACAGGACCGCAGTTTCACAAGGTTCATGTTGGAGTCGGTCATCGCTTGGATGCTTTTTCCTCTGGAGTGTTAGTTTTAGGTGTTGGGAAAGGAAATGGAGTGCTGGAGCATCTGTGTAAATCACATGTAACCAGGGACTACACACTTGAGGGGGAGTTTGGAAAAGCCACCGATAATTTCTCTCACACAAGCAGAGTCATAGAGAAAACCACATATGACCATGTTACCCAGGATAAGCTCGAGAGAGTCCTTGCCATGATACAGGGAGCCAATCAGAAAGCCTTAATCACGTATTCTCAGGTGGATCTGAGCACTCAAGAAGCTTACGAGCTTGCAGCAAGGGGGTTATTGTATCCTCATGAGGTCCAGTGTGTGAATGAGACTCAAAAGTATCTGCGTAAATTGATTCATGAGGTAGGACTAGAGCTGCGGACTTCTGCGGTCTGTTCTGGAGTGCGTCGTACACGAGACGGTCCCTTCAAAGTAGAGCATGCACTCACCCGACAACACTGGACTGCTGACAGCATTATACAAGCTATTGCTCACTTTCGCAAGACTACCCGCAAAATCAGGAAATCTGGAATGTACAGGCAGACTGCTGGCCAGTTGAACTCAAGCGCAAAGATCCAAGAGCAAATCACAAGTCAAACTGGACAGTCTGAGCAAACAGGTCAAGAGCATGTTCAACTCACAAGCCCTACTTCTGATATAATTGTGGAGAAAGTGACACCTGGGACTCTGGGGGAAAGGGAAGTGAAATGATTCGACAACGTCCTCAATTAGGATGATTTGATTTATGAGTTCTGACAAGTATTTAACTTTTCACTATAATTTATGAATTTGTCATCATTGTGCATAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_09987410_09989834.mRNA True 2797 mRNA 0.38 8 9987308 9991512

Neighbor

gene id symbol gene type direction distance location
CI01000340_09985390_09986420 HDHD3 coding downstream 888 9985175 ~ 9986420 (-)
CI01000340_09961043_09968792 SLC2A11A coding downstream 18323 9960995 ~ 9968985 (-)
CI01000340_09922690_09932467 NA coding downstream 54326 9922389 ~ 9932982 (-)
CI01000340_09911298_09920295 NA coding downstream 67013 9911279 ~ 9920295 (-)
CI01000340_09907511_09910003 SIRT4 coding downstream 77305 9907511 ~ 9910003 (-)
CI01000340_10005818_10020244 NA coding upstream 14180 10005692 ~ 10020244 (-)
CI01000340_10025958_10028902 SRSF3 coding upstream 34144 10025656 ~ 10029589 (-)
CI01000340_10051115_10063764 SLC6A13 coding upstream 59012 10050524 ~ 10064237 (-)
CI01000340_10117381_10122090 SYNPR coding upstream 125210 10116722 ~ 10122090 (-)
CI01000340_10258762_10264352 NA coding upstream 267041 10258553 ~ 10265625 (-)
G491993 NA non-coding downstream 27298 9959744 ~ 9960010 (-)
G491992 NA non-coding downstream 28927 9958146 ~ 9958381 (-)
CI01000340_09898618_09904814 RFT1 non-coding downstream 88371 9898618 ~ 9904814 (-)
G491983 NA non-coding downstream 119955 9867049 ~ 9867353 (-)
G491980 NA non-coding downstream 128763 9858271 ~ 9858545 (-)
G491915 NA non-coding upstream 40808 10032320 ~ 10034890 (-)
G492001 NA non-coding upstream 74017 10065529 ~ 10067185 (-)
G492000 NA non-coding upstream 80520 10072032 ~ 10073240 (-)
G492005 NA non-coding upstream 105160 10096672 ~ 10102409 (-)
G492017 NA non-coding upstream 133529 10125041 ~ 10125278 (-)
G491712 NA other downstream 1187731 8799201 ~ 8799577 (-)
G489511 NA other downstream 3659936 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3766666 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4662164 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 5328247 4598714 ~ 4627447 (-)
CI01000340_10357202_10357606 NA other upstream 365672 10356758 ~ 10359856 (-)
G493109 NA other upstream 1682234 11673746 ~ 11677994 (-)
G493266 NA other upstream 2075665 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2620704 12577435 ~ 12625758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location