XLOC_013596 (arhgap42b)


Basic Information

Item Value
gene id XLOC_013596
gene name arhgap42b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 41857403 ~ 42071876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026736
ATGGGGTTGCCGACGTTAGAGTTCAGTGACTCGTTTGTGGATAGTCCGGATTTTAGAGAAAGACTCAAATGTCATGAAATCGAGCTGGATCGAACCAACAAGTTCATCAAAGAGCTGATTAAAGATGGACACCAGCTGATCTGCGCGCTCAAGAATCTGTCGGCAGCAGTGCAGAAGTTCTCTCAGTCTTTGCAGGAGTTTCAGTTTGAGTGCATTGGCGACGCAGAGACAGATGATGAAGTGAACATCGCTCAGTCCTTCAAAGAGTTTTCCAAGCTGCTGCACACCATGGAAGAGGAGAGAAGGCGGCTGATACAGAACGCAGATGATGTTCTAATCACGCCGTTGGAGAGATTCAGGAAAGAACAGATCGGAGCAGCCAAAGAGGGGAAGAAGAAATTTGACAAGGAGGCGGAAAAGTATTATTCCACACTGGACAAACATCTCAACCTGTCATCCAGAAAAAAAGAATCGGCTCTTCAAGAGGCTGACGCTCAGATTGATAGGGAAAGGCAGCTCTTTTATGACGCATCGCTAGAATACGTCTTCAAAATCCAGGACGTTCAAGAGAAGAAGAAATTTGAGTTTGTGGAGCCGCTCTTGGCCTTCCTGCAGGGTCTGTTCACATTCTACCATGAGGGTTACGAACTGGCCCACGACTTCGAGCCCTACAAGCAACAGCTCCAGTTTAACCTGCAGAACACAAGAAACAACTTCTTGAGCACTAAGCAGGAAGTGGAAAACCTGATGAACCGGGTTCGATCTGCAGATCAGGATCAAAAGCCCCCGGGCCAGTGGACTATGGAAGGCTACCTGTATGTCCAGGAGAAGCGTGAGTGGCCTTTGGGCTGCACATGGACACGTCATTATTGTACATATGACAAAGATAATCAAACGTTCAGCATGTGCAACACAGAGGCAAAACCAGCAGCCAAACAGAACGGCGTCACTTCAAATCCCCCTGAGAAGTTCAGGCTTAAGTCTTGTATTAGAAGAAAGACTGACTCCATTGATAAACGCTTCTGTTTTGATATTGAAGTGGTAGAAAGGCATGGCATTATCACTCTACAAGCGCTGTCCGAGTCCAACAGGAGGCTCTGGCTGGAAGCAATGGACGGAAAAGAGCCGATATACAATCTTCCTGCTATTCTAAGCAAGAAAGAAGAAACATATTTAAATGAGACTGGCTTTAATTTTGTGAGGAAGTGTATACAACTGGTGGAGGTCAGAGGGCTCAACACTATGGGTTTGTACAGAGTCGGTGGAATAAATTCAAAAGTGCAGAAGCTCATGACCACAGTCTTCTCACCCAAAGCAGCATCAGATCTGGATTTGGACCCGGACACTTGGGACAACAAGACCATCACCAGCGGCCTCAAGAATTACCTCAGGTGTCTTTCTGAGCCTCTAATGACGTACAAGCTCCACTCTGATTTCCTCATGGCTGTCAaATCTGACGATCAGAACTACAGAGTGTGTGCAGTTCATGCGCTGGTGCATAAACTCCCTGACAAAAACAGAGAGATGCTGGAGATATTAATCAAACATCTGCTCAATGTTTCCAGTCACAGTGAGAGTAACATGATGACGGTGTCTAATCTGGGGGTGATCTTCGGCCCCACACTGATGCGCTCACAAGAGGAAACCGTTGCTGCCATGATGAACATCAAATTCCAAAATATCGTGGTGGAAATTCTCATCGAAAATTTGGAAAAGATATTTCATCAAGCACCAGACCCTAATGTTCCCCTGCTGCAGCCTCTGTCCCGTCCGGAGTCCCGCAGGAGCAGAGCCATCGGTCTGACATCGGGCCCACGCAAACCCAGGAGCCTCTACACCCCCTCACTGTGCCTGGCGGACGCTGACAGTGACACGTTCAGCAGTAGTTCAGGCAGCACTCCTATCGGCAGCATGGACTCGCTCTCCTCCCACTCCTCTGAGCAGAACAGCTCCTCCAAAACCTGTTCGTCTCCGCAGCACAAGGACAAGCCCCCCTTCCCCGGGCCGCGGAGCCCTTTTTCCCGCTCCTCCAGTGAGCCGCAGGGCCCCGCCGGCACCAGCAGCCCAGACTCCAGCTCCAGAGAGCAGGACTGTCCTGCAGATGAGTCCTTCAGGGGGAACATCAGGTCTACAACAGCTCCTACTAAAGCTCCTCATGCACAGCTGAACCGCTCCATTGCTCAGTCTCTGAGATCACTACACTTAACTGAAGGAGTGTGTAAGAGTTTTGCAGGCTCTGTGCATAGTCTGGCGTGTGTCGACGGCTCCAAATCCACCACCTGCCTCGATCTGCCACCTAAAGCACTTCTGCGGAGAAAGCTGGACAACAACAGCTCTACTAATGGCTATCAGAGACCAGGATCTGTAGTGGCTGCCAGAGCTCTGCTGTTTGAGAACCCATCAGCTGTTAAACATCCTCCATTAGGAAGAGACGCCAAAGCCATTTATTCCTGTGAAGCGGAACACAGCAATGAACTGAGTTTCCCACAAGGGGCGCACTTTTCAAATGTGTATCCTTCAGTGGAACCCGGCTGGCTCCAAGCAACATTTGAGGGCAAAACAGGCCTCATCCCTGAAAATTACGTGGTGTTTCTCTGA
>TCONS_00026735
ATGGGGTTGCCGACGTTAGAGTTCAGTGACTCGTTTGTGGATAGTCCGGATTTTAGAGAAAGACTCAAATGTCATGAAATCGAGCTGGATCGAACCAACAAGTTCATCAAAGAGCTGATTAAAGATGGACACCAGCTGATCTGCGCGCTCAAGAATCTGTCGGCAGCAGTGCAGAAGTTCTCTCAGTCTTTGCAGGAGTTTCAGTTTGAGTGCATTGGCGACGCAGAGACAGATGATGAAGTGAACATCGCTCAGTCCTTCAAAGAGTTTTCCAAGCTGCTGCACACCATGGAAGAGGAGAGAAGGCGGCTGATACAGAACGCAGATGATGTTCTAATCACGCCGTTGGAGAGATTCAGGAAAGAACAGATCGGAGCAGCCAAAGAGGGGAAGAAGAAATTTGACAAGGAGGCGGAAAAGTATTATTCCACACTGGACAAACATCTCAACCTGTCATCCAGAAAAAAAGAATCGGCTCTTCAAGAGGCTGACGCTCAGATTGATAGGGAAAGGCAGCTCTTTTATGACGCATCGCTAGAATACGTCTTCAAAATCCAGGACGTTCAAGAGAAGAAGAAATTTGAGTTTGTGGAGCCGCTCTTGGCCTTCCTGCAGGGTCTGTTCACATTCTACCATGAGGGTTACGAACTGGCCCACGACTTCGAGCCCTACAAGCAACAGCTCCAGTTTAACCTGCAGAACACAAGAAACAACTTCTTGAGCACTAAGCAGGAAGTGGAAAACCTGATGAACCGGGTTCGATCTGCAGATCAGGATCAAAAGCCCCCGGGCCAGTGGACTATGGAAGGCTACCTGTATGTCCAGGAGAAGCGTGAGTGGCCTTTGGGCTGCACATGGACACGTCATTATTGTACATATGACAAAGATAATCAAACGTTCAGCATGTGCAACACAGAGGCAAAACCAGCAGCCAAACAGAACGGCGTCACTTCAAATCCCCCTGAGAAGTTCAGGCTTAAGTCTTGTATTAGAAGAAAGACTGACTCCATTGATAAACGCTTCTGTTTTGATATTGAAGTGGTAGAAAGGCATGGCATTATCACTCTACAAGCGCTGTCCGAGTCCAACAGGAGGCTCTGGCTGGAAGCAATGGACGGAAAAGAGCCGATATACAATCTTCCTGCTATTCTAAGCAAGAAAGAAGAAACATATTTAAATGAGACTGGCTTTAATTTTGTGAGGAAGTGTATACAACTGGTGGAGGTCAGAGGGCTCAACACTATGGGTTTGTACAGAGTCGGTGGAATAAATTCAAAAGTGCAGAAGCTCATGACCACAGTCTTCTCACCCAAAGCAGCATCAGATCTGGATTTGGACCCGGACACTTGGGACAACAAGACCATCACCAGCGGCCTCAAGAATTACCTCAGGTGTCTTTCTGAGCCTCTAATGACGTACAAGCTCCACTCTGATTTCCTCATGGCTGTCAaATCTGACGATCAGAACTACAGAGTGTGTGCAGTTCATGCGCTGGTGCATAAACTCCCTGACAAAAACAGAGAGATGCTGGAGATATTAATCAAACATCTGCTCAATGTTTCCAGTCACAGTGAGAGTAACATGATGACGGTGTCTAATCTGGGGGTGATCTTCGGCCCCACACTGATGCGCTCACAAGAGGAAACCGTTGCTGCCATGATGAACATCAAATTCCAAAATATCGTGGTGGAAATTCTCATCGAAAATTTGGAAAAGATATTTCATCAAGCACCAGACCCTAATGTTCCCCTGCTGCAGCCTCTGTCCCGTCCGGAGTCCCGCAGGAGCAGAGCCATCGGTCTGACATCGGGCCCACGCAAACCCAGGAGCCTCTACACCCCCTCACTGTGCCTGGCGGACGCTGACAGTGACACGTTCAGCAGTAGTTCAGGCAGCACTCCTATCGGCAGCATGGACTCGCTCTCCTCCCACTCCTCTGAGCAGAACAGCTCCTCCAAAACCTGTTCGTCTCCGCAGCACAAGGACAAGCCCCCCTTCCCCGGGCCGCGGAGCCCTTTTTCCCGCTCCTCCAGTGAGCCGCAGGGCCCCGCCGGCACCAGCAGCCCAGACTCCAGCTCCAGAGAGCAGGACTGTCCTGCAGATGAGTCCTTCAGGGGGAACATCAGGTCTACAACAGCTCCTACTAAATCTCTGAGATCACTACACTTAACTGAAGGTAGGAGACTAAATATGTACTACAGCTCTGTGCATAGTCTGGCGTGTGTCGACGGCTCCAAATCCACCACCTGCCTCGATCTGCCACCTAAAGCACTTCTGCGGAGAAAGCTGGACAACAACAGCTCTACTAATGGCTATCAGAGACCAGGATCTGTAGTGGCTGCCAGAGCTCTGCTGTTTGAGAACCCATCAGCTGTTAAACATCCTCCATTAGGAAGAGACGCCAAAGCCATTTATTCCTGTGAAGCGGAACACAGCAATGAACTGAGTTTCCCACAAGGGGCGCACTTTTCAAATGTGTATCCTTCAGTGGAACCCGGCTGGCTCCAAGCAACATTTGAGGGCAAAACAGGCCTCATCCCTGAAAATTACGTGGTGTTTCTCTGA
>TCONS_00026734
ATGGGGTTGCCGACGTTAGAGTTCAGTGACTCGTTTGTGGATAGTCCGGATTTTAGAGAAAGACTCAAATGTCATGAAATCGAGCTGGATCGAACCAACAAGTTCATCAAAGAGCTGATTAAAGATGGACACCAGCTGATCTGCGCGCTCAAGAATCTGTCGGCAGCAGTGCAGAAGTTCTCTCAGTCTTTGCAGGAGTTTCAGTTTGAGTGCATTGGCGACGCAGAGACAGATGATGAAGTGAACATCGCTCAGTCCTTCAAAGAGTTTTCCAAGCTGCTGCACACCATGGAAGAGGAGAGAAGGCGGCTGATACAGAACGCAGATGATGTTCTAATCACGCCGTTGGAGAGATTCAGGAAAGAACAGATCGGAGCAGCCAAAGCTGACGCTCAGATTGATAGGGAAAGGCAGCTCTTTTATGACGCATCGCTAGAATACGTCTTCAAAATCCAGGACGTTCAAGAGAAGAAGAAATTTGAGTTTGTGGAGCCGCTCTTGGCCTTCCTGCAGGGTCTGTTCACATTCTACCATGAGGGTTACGAACTGGCCCACGACTTCGAGCCCTACAAGCAACAGCTCCAGTTTAACCTGCAGAACACAAGAAACAACTTCTTGAGCACTAAGCAGGAAGTGGAAAACCTGATGAACCGGGTTCGATCTGCAGATCAGGATCAAAAGCCCCCGGGCCAGTGGACTATGGAAGGCTACCTGTATGTCCAGGAGAAGCGTGAGTGGCCTTTGGGCTGCACATGGACACGTCATTATTGTACATATGACAAAGATAATCAAACGTTCAGCATGTGCAACACAGAGGCAAAACCAGCAGCCAAACAGAACGGCGTCACTTCAAATCCCCCTGAGAAGTTCAGGCTTAAGTCTTGTATTAGAAGAAAGACTGACTCCATTGATAAACGCTTCTGTTTTGATATTGAAGTGGTAGAAAGGCATGGCATTATCACTCTACAAGCGCTGTCCGAGTCCAACAGGAGGCTCTGGCTGGAAGCAATGGACGGAAAAGAGCCGATATACAATCTTCCTGCTATTCTAAGCAAGAAAGAAGAAACATATTTAAATGAGACTGGCTTTAATTTTGTGAGGAAGTGTATACAACTGGTGGAGGTCAGAGGGCTCAACACTATGGGTTTGTACAGAGTCGGTGGAATAAATTCAAAAGTGCAGAAGCTCATGACCACAGTCTTCTCACCCAAAGCAGCATCAGATCTGGATTTGGACCCGGACACTTGGGACAACAAGACCATCACCAGCGGCCTCAAGAATTACCTCAGGTGTCTTTCTGAGCCTCTAATGACGTACAAGCTCCACTCTGATTTCCTCATGGCTGTCAaATCTGACGATCAGAACTACAGAGTGTGTGCAGTTCATGCGCTGGTGCATAAACTCCCTGACAAAAACAGAGAGATGCTGGAGATATTAATCAAACATCTGCTCAATGTTTCCAGTCACAGTGAGAGTAACATGATGACGGTGTCTAATCTGGGGGTGATCTTCGGCCCCACACTGATGCGCTCACAAGAGGAAACCGTTGCTGCCATGATGAACATCAAATTCCAAAATATCGTGGTGGAAATTCTCATCGAAAATTTGGAAAAGATATTTCATCAAGCACCAGACCCTAATGTTCCCCTGCTGCAGCCTCTGTCCCGTCCGGAGTCCCGCAGGAGCAGAGCCATCGGTCTGACATCGGGCCCACGCAAACCCAGGAGCCTCTACACCCCCTCACTGTGCCTGGCGGACGCTGACAGTGACACGTTCAGCAGTAGTTCAGGCAGCACTCCTATCGGCAGCATGGACTCGCTCTCCTCCCACTCCTCTGAGCAGAACAGCTCCTCCAAAACCTGTTCGTCTCCGCAGCACAAGGACAAGCCCCCCTTCCCCGGGCCGCGGAGCCCTTTTTCCCGCTCCTCCAGTGAGCCGCAGGGCCCCGCCGGCACCAGCAGCCCAGACTCCAGCTCCAGAGAGCAGGACTGTCCTGCAGATGAGTCCTTCAGGGGGAACATCAGGTCTACAACAGCTCCTACTAAAGCTCCTCATGCACAGCTGAACCGCTCCATTGCTCAGTCTCTGAGATCACTACACTTAACTGAAGGAGTGTGTAAGAGTTTTGCAGGCTCTGTGCATAGTCTGGCGTGTGTCGACGGCTCCAAATCCACCACCTGCCTCGATCTGCCACCTAAAGCACTTCTGCGGAGAAAGCTGGACAACAACAGCTCTACTAATGGCTATCAGAGACCAGGATCTGTAGTGGCTGCCAGAGCTCTGCTGTTTGAGAACCCATCAGCTGTTAAACATCCTCCATTAGGAAGAGACGCCAAAGCCATTTATTCCTGTGAAGCGGAACACAGCAATGAACTGAGTTTCCCACAAGGGGCGCACTTTTCAAATGTGTATCCTTCAGTGGAACCCGGCTGGCTCCAAGCAACATTTGAGGGCAAAACAGGCCTCATCCCTGAAAATTACGTGGTGTTTCTCTGA

Function

symbol description
arhgap42b Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000010654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026736 False 2598 mRNA 0.49 24 41857403 42071876
TCONS_00026735 False 2565 mRNA 0.49 25 41857403 42071876
TCONS_00026734 True 2496 mRNA 0.50 23 41857403 42071876

Neighbor

gene id symbol gene type direction distance location
XLOC_013595 rnf7 coding downstream 91305 41757263 ~ 41766098 (-)
XLOC_013594 grk7b coding downstream 103383 41740742 ~ 41754020 (-)
XLOC_013593 fzd9b coding downstream 206755 41648812 ~ 41650648 (-)
XLOC_013592 NA coding downstream 313221 41542542 ~ 41544182 (-)
XLOC_013591 ptx3a coding downstream 482283 41364437 ~ 41375120 (-)
XLOC_013597 cntn5 coding upstream 79071 42150947 ~ 42395161 (-)
XLOC_013598 NA coding upstream 389012 42460888 ~ 42606669 (-)
XLOC_013599 ttc36 coding upstream 709746 42781622 ~ 42830563 (-)
XLOC_013600 NA coding upstream 786127 42858003 ~ 42859256 (-)
XLOC_013601 NA coding upstream 1375443 43447319 ~ 43450341 (-)
XLOC_013384 BX323829.1 misc downstream 22315172 19542102 ~ 19542231 (-)
XLOC_013590 NA non-coding downstream 505920 41350989 ~ 41351483 (-)
XLOC_013589 NA non-coding downstream 512582 41343806 ~ 41344821 (-)
XLOC_013588 NA non-coding downstream 624475 41232314 ~ 41232928 (-)
XLOC_013575 NA non-coding downstream 1334879 40521492 ~ 40522524 (-)
XLOC_013602 NA non-coding upstream 1517668 43589544 ~ 43592912 (-)
XLOC_013603 NA non-coding upstream 1543831 43615707 ~ 43647433 (-)

Expression


Co-expression Network