CI01000343_00521663_00538782 (ACTN3, ACTN3A, ACTN3B, ACTN3.L)


Basic Information

Item Value
gene id CI01000343_00521663_00538782
gene name ACTN3, ACTN3A, ACTN3B, ACTN3.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000343
NCBI id null
chromosome length 1937981
location 521663 ~ 539985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000343_00521663_00538782.mRNA
ACGTTCACAGCGTGGTGTAACTCTCATCTGCGTAAAGCGGGAACTCAGATCGAGAACATTGAAGAGGATTTCAGGAATGGACTCAAACTCATGCTGCTGCTCGAGGTCATTTCAGGTGAGAGACTTCCCAAGCCTGACAAAGGAAAGATGCGTTTCCACAAGATCGCCAACGTTAACAAGGCTCTGGATTTCATCTGTAGCAAAGGAGTCAAACTGGTGTCCATCGGAGCTGAAGAGATTGTTGATGGCAACGTGAAAATGACTCTTGGAATGATCTGGACCATCATTCTCCGTTTCGCTATCCAGGACATTTCTGTGGAGGAGACTTCTGCTAAAGAGGGTCTGCTGCTGTGGTGTCAGAGGAAGACCGCCCCCTACAGGAACGTCAACGTACAGAACTTCCACATCAGCTGGAAGGACGGCCTCGCTCTGTGCGCCCTCATCCACAGACACAGACCAGACCTCATCGACTACTCTAAACTCAGAAAGGACGACCCTATTGGAAACCTGAACACTGCGTTTGAGGTGGCAGAGAAATACCTGGACATCCCGAAAATGCTTGACGCCGAAGACATTGTTAACACCCCTAAACCTGATGAGAAAGCCATCATGACCTATGTGTCCTGCTTTTACCATGCTTTTGCTGGTGCCGAACAGGCCGAGACGGCTGCTAACAGAATCTGTAAGGTTCTGGCTGTGAACCAGGAGAACGAAAGGCTGATGGAAGAGTACGAGAAACTGGCCAGTGAGTTGTTGGAATGGATCCGTCGTACCATCCCATGGCTGGAGAACCGCGTGGCGGAGCAGACCATGCGTGCCATGCAGCAGAAGCTGGAGGACTTCCGGGACTACAGGCGCGTCCACAAGCCTCCACGTGTTCAGGAGAAATGCCAGCTGGAGATCAACTTCAACACCCTGCAGACGAAACTCCGCTTGAGCAACCGCCCGGCATTCATGCCCTCCGAAGGGAAGATGGTGTCGGACATCGCTAACGCATGGAAAGGTCTAGAGCAGGTAGAGAAGGGTTATGAGGAATGGCTCCTCACCGAGATCCGTCGTCTGGAGAGACTCGATCATCTGGCGGAGAAGTTCAAGCAGAAATGCTCCCTGCATGAGTCCTGGACCACAGGAAAGGAGCACCTGCTGTCTCAGAAGGACTATGAGACAGCCTCTCTGATGGAGATCAGGGCTCTCATGAGGAAGCATGAGGCGTTTGAGAGCGACCTGGCCGCCCACCAGGACAGAGTGGAGCAGATTGCAGCCATCGCTCAAGAGCTGAATGAGTTAGACTATCATGATGCCGCTACAGTGAACGCTCGCTGCCAGGGCATCTGTGACCAGTGGGACAACTTGGGAACCCTCACCCAGAAGAGAAGGGACGCTCTAGAGCGTGTAGAAAAACTTTGGGAGACTATTGATCAGCTGTACCTGGAGTTCGCCAAGAGGGCGGCGCCCTTCAACAACTGGATGGATGGAGCCATGGAGGATCTACAGGATATGTTCATTGTGCACAGCATTGAGGAAATCCAGAGTCTGATCACAGCTCATGATCAGTTCAAGGCCACCCTGCCAGAAGCCGACAAGGAGCGCATGGCCATCATGGGCATCCAGAACGAGATCACAAAGATCGCTCAGACCTACGGCATCAAGCTGGTCGGAGTCAATCCATACACTGTCCTCAGCCCACAGGACATCACCAACAAATGGGATGCTGTGAAGCAGCTGGTTCCCCTTAGAGACCAGATGCTACAGGAGGAGGTTGCCAGGCAACAGGCCAATGAGAGACTGAGGCGTTCATTTGCTGCTCAGGCCAACATCATCGGACCCTGGATTCAGACCAAAATGGAGGAGATCGGTCATGTGTCGGTGGATATCGCCGGCTCTCTGGAGGAACAGATGAATAATCTGAAGCAATATGAGCAGAACATCATTAACTACAAATCCAACATTGACAAACTGGAGGGAGATCACCAGCTCATTCAGGAGGCCCTCATCTTCGACAACAAACACACCAACTACACCATGGAGCACATCCGTGTGGGATGGGAGCAGCTGCTCACCACCATCGCTCGCACCATCAACGAGGTGGAGAACCAGATCCTGACCCGCGATGCCAAGGGCATCAGCCAGGAGCAGCTCAACGAGTTCAGAGCCTCCTTCAACCACTTCGACAGGAAGAGAAACGGCATGATGGACCCCGACGATTTCCGTGCATGTCTGATCTCTATGGGTTACGATCTGGGTGAGGTGGAGTTCGCCCGCATCATGACCCTGGTGGACCCCAACAACACGGGCGTGGTCACCTTCCAGGCCTTCATCGACTTCATGACACGCGAGACCGCTGAAACCGACACTGCTGAACAGGTCATGGCCTCCTTCAAGATCCTGGCCTCCGACAAGCCCTACATCACTGTGGAAGAGCTTCGTCGTGAACTCCCACCCGAGCAGGCCGAGTACTGTATCAGCCGCATGACCAAGTACGTCGGCCCCGAAGGGGCACCTGGAGCCCTGGATTACATCTCCTTCTCCAGCGCCCTCTACGGAGAGAGCGATTTATAAATGCTCTTTCTTTTTCTTCTTCTTTCCTCTCATCTTTCTCTCTCCTCTCGTTGCCCAAATGTAGCTTTCAATTTGCGAGAGTTAATAATATCCCTCGTTTCCCCTCATAAATATTCTCTGTTATTCTGTCTACAGCCCACACTGCTAGCTTTAATGTCATGTATCTTACATCCACCCTATAAACAGAGGGATGTGTTTTTTAGTCTCGCCGTCACTCAAATTTATGTATAATTTGGAGGTCTCCAAAAACCCTCCCATATGCATCTCATATGAGTCAACATGGAATCAAAAATGGCCCTATTTACCTTTCTAATTCACGTTCATGGTCTTAGTACATGCCACACTAAAGAATGTCTTCATAATCTTTCATCAAAATATAACTTGCCTCTGAAACGACTTTGTTTCAGATGATGTCATCTAGGCCAGCAATTAATTGACAAATAGCTATTTAGCCATTTTTTAGGCTTGTAGGTAATGCACATAAATGCAGTCTTGCTAAAGTCTTGCCAATAGTCAATGCACACTCTGGATTTATTCTGGATATGAAACACTTTTCACCATCCTGATGGATAAAATCAAGTCTCGCCCTACATTATAAAAGTAAAATGGGTTGTGAATGCATTTCATGTTGACTTTAGCACACTAGGCCCAACCTTCCCTCTCTGTGCCTAAAAAAAACCTTCCAACATGAAAAAAGATATATTAAAAAGTGTTTGTTGATGCTAATGAGCGCTTGTGAAGATGCATGCTGCGTTTATTCTACATACATTAATATGCGAAAGAGCCCCCCCTTCTTGTTAGGTCTGTACTGTATTTTTAAGACCCCAAAAAGCACTACTGCTGTCCAGTGTCTTCTTAATATGAAACTGTGAGAACAACTAAATAGTCTCTACACAGAACGTCGTGTCTCTCTGTATGTTGTGTTGTCATGTGTCACCCCTTAATATTGTTTATGATGCAAGTCTTCACTGATTGTGATGTTCAGAGGCAAATTCATAATTTGTTTTCTTTTATTTGGAGAGTATGTGCCAAATTATCAACCAAAGCCAGTAAATGAACTTAAAGATGTTATGGCAAAGTGTATGTGTTGTACTGAACGGAAAGGTTTCTGCTAGCCAAAGTGCTGAACTAGAACCAGGTTTGCCTTAAAAACACTGGAAAGACATTGAAATCCAGGGCCGTGCAAGATGGATTCATTACTAA

Function

symbol description
actn3a Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including musculature system; ovary; pectoral fin; pharyngeal arch 3-7; and segmental plate. Orthologous to human ACTN3 (actinin alpha 3).
actn3b Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including musculature system; ovary; pharyngeal arch 3-7; post-vent region; and segmental plate. Orthologous to human ACTN3 (actinin alpha 3).
actn3 Enables identical protein binding activity and transmembrane transporter binding activity. Involved in focal adhesion assembly. Located in focal adhesion.

NR:

description
Actinin alpha 3b

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000343_00521663_00538782.mRNA True 3762 mRNA 0.48 20 521663 539985

Neighbor

gene id symbol gene type direction distance location
CI01000343_00499439_00502081 RBM14B coding upstream 18009 498615 ~ 503654 (+)
CI01000343_00487812_00497022 CCS coding upstream 24191 487812 ~ 497472 (+)
CI01000343_00464927_00480437 NA coding upstream 41226 464927 ~ 480437 (+)
CI01000343_00454724_00464029 KLC2 coding upstream 57570 454258 ~ 464093 (+)
CI01000343_00428809_00446370 PACS1 coding upstream 75177 428809 ~ 446486 (+)
CI01000343_00575455_00577282 GAL3ST3 coding downstream 34706 574691 ~ 577494 (+)
CI01000343_00617627_00630920 NA coding downstream 77642 617627 ~ 631263 (+)
CI01000343_00707941_00712532 NA coding downstream 167956 707941 ~ 712626 (+)
CI01000343_00726846_00729654 CLCN3 coding downstream 186861 726846 ~ 729891 (+)
CI01000343_00738858_00768868 CLCN3 coding downstream 198116 738101 ~ 768927 (+)
G497752 NA non-coding upstream 148306 373085 ~ 373357 (+)
CI01000343_00325619_00332374 PNP, PNP5A non-coding upstream 195260 325563 ~ 332525 (+)
G497664 NA non-coding upstream 230268 285708 ~ 291395 (+)
CI01000343_00276188_00284420 NA non-coding upstream 240257 276122 ~ 284434 (+)
G497721 NA non-coding upstream 282305 239071 ~ 239358 (+)
G497754 NA non-coding downstream 9723 549708 ~ 550038 (+)
G497762 NA non-coding downstream 47717 587702 ~ 587908 (+)
G497769 NA non-coding downstream 51174 591159 ~ 591368 (+)
G497773 NA non-coding downstream 111080 651065 ~ 651890 (+)
G497797 NA non-coding downstream 143571 683556 ~ 683774 (+)
G497821 NA other downstream 485492 1025477 ~ 1026398 (+)
CI01000343_01368460_01381795 SNRPA1 other downstream 831815 1367831 ~ 1381822 (+)
G498036 NA other downstream 1096303 1636288 ~ 1646589 (+)
CI01000343_01668952_01681097 NA other downstream 1123967 1668952 ~ 1681277 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015531 actn3,LOC101158802 coding CM030132.1 CM030132.1 10924861 ~ 10941495 (-)