CI01000343_01247693_01260224


Basic Information

Item Value
gene id CI01000343_01247693_01260224
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000343
NCBI id null
chromosome length 1937981
location 1247693 ~ 1260265 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000343_01247693_01260224.mRNA
GACGTACATGGAGAGCTCAGAGAGTAACTCTGCTGGCAGCAGCAGCAGCATAGAGGTTAATCACTCCGAGACGGTTTGCAAAACCCTCTTTGAAAGTCTGGAGTCTGAGTTTGAATTTAAACAGCAACTCTGCAAGAAAGATATTGAAAAACTTTTGACTACCAATCCAAAGGTCTTTAAACACTGTAAACTTGAAATAGAAAGACATGATCAGGCATATGCCAGGCCTCTTGATGACCCAATGCTCTCTATCAAAATCTATGGCAGAGAAAATGTGGGCAGATCTTTTCCTGGAGATGAAGTCTGTGTAGAGATCTTGAGCAGAGAACGATGTCTGCGGGAAGGTGAAGTGGTAAAAGGGCGGGTCGTTGGATTAATAAATAGAGATGAAAACTCATTAACCTTCATCTGTAAAATGGTGGAAGACAATCCAAAATATGTTACACCCATTAACAAACGCATAACCAGAATGCGTACAGTTCAAAAGCAGAGAGACAAAATTGAAGTACGAGAATTCAGATGCGGACGCTGGGTTAGAAAGGAATTTGTAAACATAGCTGAGAATCAAATGTTAGTTGTCAAGGTTTTAAAATGGGAAAATATGAAAACATTCCCTCTCGCTGTGGTTACAAAAGTAATTCCAGAGTGTGATGCTTTGAATGAAATGCTAGGCCTTGAACTTGGCTCTGAAGACACACCTCCACCATTCAAACTACAAGTACCTGAAGACGATATGGCTTCAGAAAGGAAGGATTTATGTGACATTATCACTTTCACCATTGACCCAACTACAGCTCATGACCTGGATGATGCCATTAGTGTGACTGAAATGGGCGATTCCTACCAGATTGGTGTTCACATCACAGACGTCGCAAGTTGCATTACCAAAAATAGCAAGCAAGACAAATTCGCTAGACAGCGCGGCAGAACAATTTACACTTCAGAGAAGGGAGATGTAGCCTTCATGTTCTCAAGAGAGCTGAGCAATGACCATTTGAGTTTGATGCTTGAAAAAGATCGGAAAGCCATATCCTTGCTGATAGACGTTGACAAGAAAACAAGTAATATACTAAACTGTGAATTTTATCCAACCCGCATTAGGTCTGACAGACAGATGTCATACGAAGAGGCAGACCAAATTATTCAGAAGTACTACTGCCCGGATGACACAAAGCCTCTGCGGTTCTCTTGCGTGGAGGATTGTGTAGCTGTTGCATACCATTTCTCTGAGGTGCACCGAAAATGCAGACTGGAAGGCAGATGGCCATTTAGGAGGCAGGCAGGGCAAAGTCGCTCTCATGCCATGGTGGAGGAACTAATGAATCTCTACAATAGTGCCGCCGCTGAAAAACTCATATCTACAGAAGTCACAAAAGATCTCACACCAATGAGGTGTCACCGGGAGCCAGACCCAGAACGACTGATCCAGTTTAGAAAGAAATACATTGACCAAATTCCCATGTCACTTTACTTTTCAAATATCTTTGAGGTAGATACTGAAAATAGTGAAAAGGATGTTAGGTCCAATCCAGAATATGACAATATGGAGCATGCAGGCATATCATTTAACATTTTCACCTCCATATTTCACAAGATGGAAGCGTTTGCACGAAGCAAAGACTATTATAATCTGATGCAGTTAATTTTTTCAGATGAAATCCATCCGACATTTGTCCCCATGGTGCAGGAGTTTCGTGAAATTCAGAAGAAAGCCTTCATCCTTCGTTCGTGCTCCTCAACAGATTCCAGGTTGGGTCACTATGATTTACAGCTTAACGCCTACACCTGGGCGTCATCTCCTATGAGGCGTTATCTGGACCTTATCTTGCAGAGACTTCTGCACACCATGCTCTCTAAGAAAAAACGAAGGCAAGCTGACTACACAAAAAATGAAATCAGAGAGTTTTGTCAGTCTGGAATGGATGCAGAAGAGAAGGAGGCTCTGGTGTTGAGACTAAGAAAGGTTCAGTTTGAACCCAAAGATGTGGTCAAACTTGCAGTGGTGGACCAGATCACTCCGCAGGGGCATGAATTCACAATATCGTTCCCTCTAAATCCTATGTTAGAGGTGATTACTATCATGTACAAGCATCTCAAAGTTGTGGATCAGCCGAGTTACAATGAGGACAAGAACTCCATGACTCTTAAGTGGAAGAGGAGAGCGTATTCGTTCGGCGAATCATTCAAGTTTTCAGACCCATCAAAGCCCATGAAAAATGTGACTCCAGTGTCAAGTGTCATGTGGAAAAGACTGGTATCTGCCGTAAAACAGCAGGATTGGGTTAAGATTGATCAATGCCTCCGAGACATGAAAAGAGGGGAGAATGAGAATGAAGAAACTAGAAGGCTGACAACTGATGTTTGTTCAGAGGAACAACGCCATTACAAGGAACCCACCATGGAGCTGAAATCAGGCACGGTTGTTCAGGTGCAACTTGGAACCGAACTCAAAGATGGCTTTCCAGTTCCTGTAGTTCTACTGCTGAACATTAATGAATGCTTTGAGATCTGTTTGGAGCACACAAGAAACCCTACTGAGTGCTTCTCCAAAGCAGTATGCAATGCATCTAAGACTGAATATAAGAGCTACAAGGAGTACCAGAACATCTGGAGACAACTGTGTCAGATAGACACCGCCTACAATGCTTTAGAAGAAAATAACAATGTCATCTTAGAGAATGTGCATATAAAATGGAGCGGAGATGAAACAAATCTCCAAGGGTTTTTTTATATAACCAAGACTCAGAAAAAGGAATGGTCTCTGGAGTTTGACCTTACAAACTGCTTCTTGTGCATCAGACTAAGACATCAGAAACCAGAGAACAATGAGAATAATGCAAAACATTTGAATGGATCTGCAGTTTCAGATCTGCAGGGTTCACTACCTTTCACATGGGTTGCACATGCAGTAACCAGCAAAACAAAGAAAAAGAAGGATACAGACAATGAAGACCGGATTAATTTTCAGATCACACAAAGATCTATGAGTTACATCCCACCCAAGGTTTATGCCCAGGGAACAAACTTCACCATAGAGGTCATTCCCAAAAAAATTCCATATGTGCTCAGGGAACAAGCGATTGCTAACCTAAAACTGGCTAATAACCTGGTGAAGAATGTCGCCACTAGACAACTTGAACTGAATGATGATGATGATATAGAAAATATCAGCTTGTACAATGTGGACGAAAACCTGAACCTGCCACCTCTGAATAAGAGCCAGAAGAAGGCTGTTGAGGAAGCTATGATGAAACCTTTTACTGTGATTCAAGGCCCACCAGGTACAGGGAAAACAGTGGTTGGTATTCACATTGTTTACCAGTTTTTCATGAAGAACAAAGACTTTCTGGCCTCGTCCGAATCTTCCAAATCAACCCCTGATGAGAAACCCCCAAAAAAGCCTGCCATCCTGTACTGCGGACCTTCAAACAAGTCTGTGGACATTGTTGCAGAGCAGTTGCTAAAACTCAGAGGAGTCCTAAAGCCTCTGAGAATCTACTGTGACCAGATGGAAATGCGTGAATTTCCATATCCAGGCAGTAACATGAAGCTTTGCCGCAGATCCCTCCGTGATGAAAAACCAAAGGAGGAGCTCAGGGATATTACTCTGATGTACCTTGTCCGTAAAGCTGAAAATCCTATTTCGGAAAAAATAACAGACTTGGCTGGGCACTTAACAGAGGATAAAATAGATGAGTACAGGGACGTTTTGAAGGAAGCTCATCAGCATGAGATTAAGAAGTGTGATGTAGTTCTGTGCACCTGCGCCTCAGCATTGAAACCCGAAATCCGGGAGGTCATGGATTTCCGGCAGATACTCATTGATGAATGTGCCATGGCAACAGAGCCAGAGGCCTTCATCCCTTTAGTTTCCTACAATCCACAGCAGATTGTTTTGCTGGGTGACCACAAACAGATACGGCCGATAGTGCAGTGTGCCCTTGTGAAAAAGATGGGCATGCAGCAGTCTCTGTTTGAACGCTACATGGATCTGGCCATAATGTTGGACACTCAGTACAGAATGCATGAAGAAATTTGCAGGTTTCCTTCAGAAGAGTTTTATAATGGCAAACTGAAAACCGGAGCTGAACGAGGACCCCCCTGCCTTCTTAACAAGTACGGACTGCCAACGGCGATCTTGTTTGGCCACGTCCAAGGTGAAGAAGTCAGTTTAGTGGTATCTACAGAAAAGGGCAATGAGAACTCAGTGGCCAACACTGAGGAGGCAGAGCAGGCTGTCAATGTGGCACATTTGTTGATTAAAAAATCACACGTACCACCTCAGAGTATTGCGATTCTGACTCCTTACAATGCACAGGTGTCAGAGATCAAAAAGACAATGGAGAAGAGGGGTATTACAAACGTCACCGTTTGCACAATTATGAAAAGCCAAGGAAGCGAGTGGCTGTATGTGATCGTCTCCACTGTTCGTTCCTGCTCCATATCTGACATTGAAAGCTACACACCAAGTAAAACATGGCTTGGAAAAAGACTCGGATTCATCACCGATCCAAATCAGGTCAATGTTGCCATAACTCGTGCACAGGATGGACTGTGCATTCTGGGTAATAGTGACCTGTTGAGATGCTGTAAACTTTGGAACAGACTCCTGCAACACTATTACAGAAAGAACTGTGTGGTGAACCCAGCTAATGACATTCAGGTCAAAGCACTGCCGAAAAAGAAGACGAATAAGAAACAGAAAGAGTGTCATGGCAGCGGATAAGTTTAGTATGGCTCTAATGTAGCATTAAGTGGATTTGCACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000343_01247693_01260224.mRNA True 4767 mRNA 0.43 12 1247693 1260265

Neighbor

gene id symbol gene type direction distance location
CI01000343_01056416_01066755 NA coding upstream 180809 1056416 ~ 1066884 (+)
CI01000343_00801086_00807630 INO80B coding upstream 439348 801086 ~ 808345 (+)
CI01000343_00738858_00768868 CLCN3 coding upstream 478766 738101 ~ 768927 (+)
CI01000343_00726846_00729654 CLCN3 coding upstream 517802 726846 ~ 729891 (+)
CI01000343_00707941_00712532 NA coding upstream 535067 707941 ~ 712626 (+)
CI01000343_01292141_01356622 NA coding downstream 31876 1292141 ~ 1356667 (+)
CI01000343_01368460_01381795 SNRPA1 coding downstream 107566 1367831 ~ 1381822 (+)
CI01000343_01384210_01460043 CHSY1 coding downstream 123945 1384210 ~ 1460043 (+)
CI01000343_01657575_01661041 NA coding downstream 397310 1657575 ~ 1661041 (+)
CI01000343_01668952_01681097 NA coding downstream 408687 1668952 ~ 1681277 (+)
G497940 NA non-coding upstream 15412 1231941 ~ 1232281 (+)
G497904 NA non-coding upstream 22996 1221464 ~ 1224697 (+)
G497917 NA non-coding upstream 100388 1146910 ~ 1147305 (+)
G497855 NA non-coding upstream 115337 1129876 ~ 1132356 (+)
G497896 NA non-coding upstream 126980 1119286 ~ 1120713 (+)
G497912 NA non-coding downstream 70841 1331106 ~ 1334394 (+)
G497997 NA non-coding downstream 288981 1549246 ~ 1549997 (+)
G498013 NA non-coding downstream 312306 1572571 ~ 1573012 (+)
G498018 NA non-coding downstream 323804 1584069 ~ 1592195 (+)
G497821 NA other upstream 221295 1025477 ~ 1026398 (+)
CI01000343_00276188_00284420 NA other upstream 966287 276122 ~ 284434 (+)
G498036 NA other downstream 376023 1636288 ~ 1646589 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location