G503438


Basic Information

Item Value
gene id G503438
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000346
NCBI id null
chromosome length 2218337
location 1702082 ~ 1706674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU577386
GGTTTTTATGCCAATATTGCAGTTTTATTATTTAATGACATATGGAACTGAGCAGGTGCAATATGTACAAAATCAAACAAACAGACAAATGAAACAGAACTAATTCTCCTTGTTTCACGAGGGCCCACGATCCTAACATCAGCGGCCCATTAAGAACTGAGATTGCTACCATACTGATACCTCTGAATATTATAACTAGAGCAGACAAAGAAGAAAAGAGAGCAAAAAAAAAAAAAAAAGACACAAATGGAAGTAAAAGCTTAAGAAGGGTGGAGGACGAGCTGCACACATAAAGCCTAACACAGAGCATCAAATTAGGCACAGCAGGATTGCTTTACATGAAAAGTGACTGTAAGCAACTAATCTAGACAAATGTGGTTTTCTCTAAGTGCAAAACCAGCGGAAAGGGTGAATTACATAACTAAAACTGTCCTAGAGGCATAATAACGTGACAAGATGCAATATAACACATGCGGCCACAAAACTCCCCCGATGGTAAAACAGAAAAAGTTGTGCCCTATTTAAGCCTTTGATTACATGTTCATGTCCAAAAGGCAAAGCAAGACAACATTATGACCAATTCAAGCTCTTTGTATGGAACTAGAGAACCGCTAAAGTTACCACAGTTTGTCTACAGTACATAAGCATTTATTTTCATCTTTCTCTCTTCTATAACTATTGAGATATCTTTGAAAAGCTGCCTCTGGTGCCATGTTTGAAAAGCAGTGCATGAAAATGTAAGTATAAGACATTTGGCATATCACCTATACATTGATCAGAGCTCATTAAGCACAAAAATAGTTGTTTTTGGAAGAGCAAAGTTAATGGAGAAATGTAATATATAATGGAAAGGAAATAACGACTATTTGTTCACTCAGATTTGCCATTAAATGTGTTTTTAAGGCTCGGCACATGACCTCCACATACGTGCCTTGGACAATTAATGAAAAAAAAAAATGTTTTGAGCTCTTCCATTGATTTATAACTGACAGAAAAATTATATAATGCAAATTTATGGATTTTGTTATCCTCCAATTTTCTGTGCAATTAAAACACACAGCGCAACATGTCAGTTTCAGATATGGGTCTGAACAAGTCCTTCATTCTAAAGCTCAACACCTTCAAAAAATGTAAACAGTAAAAAACAGCAAGATTGTCGATTGGTTTGTTCAAAGAGCAACATAATGCACTTTACCACCACAACACCATGGTAAGGGAGGGGCAGAGCTGAGCAAATCCACAATGTCAACAAAACGTGGAACAGAGGCAGCGATCAGAGTGATGGAGCGGTTCAAAAATGTTCTCACTATAAATGCATAAATGATGATAATATTGCGCTATGCTAACAAAAACATGATAAAGTCAAACTGAATTTATGGTCTGAATTAATCGCTTTCTTTCGTTTGTGTAGGAGTTGTTTCAATGATGCTGTATCATTTCAAGGCGGACTGGCTTAAAGCACTTGTTTTTGTCTTTTTTGGGTCGTGATCTAATATAAATCAAGGGAAGCGTTTGAATAATAATGGGAAAAAATGACTTGCTTGAATGGAAGCTCTTACAATGACAGTGACTTTAGTTAAAAACCATCAAACATAACAAATCAAATGGACTGCTAGTAAAAGTTTAAGATGACAAATTAAAAATATCTGTAAAAAATGCATCCATGCTTTTGCCTAGTGCCATCTTCCCCCAAATGGAAGTGTGCGTTTATATTATTCTGAATTTGCAAGAACATTGTAAAATGGAAGAAGACTGTAATGCGAGAATTCTGGGAAACCGAGTGCAAGAGTTTCAGGTTAAACTACCTCATGGAAGATTTTTGCAAAGAGGCTGTCACGGAGAAAGAAAGAGGGATGATGATGCTAATGATGAAAAGAAAAATCTAGTGGAGGCAACACGTGAATTTTTTTTCTTCTTTTTTTTTCTCTTTTTTTTCCTTTTTTTTGCAGAAACATTCAAGTTACAGTTTTCCCCGAAATAAACTACATTATAGGCCTACAATGCTGGAGTATTGCCTTATTTGACGGGTCGCCTACTTGTACAACACTACAGATTTTCCAAGTAAGGAAGACAGTGCAGGATCCACGCAAATCTACAAACCTACCAAAAAGGTGTCTGATTAAATTAGTATGAAGAAGAGGAGGAGGATGAGGAAGAAGAAGTGTAAAAGAAAGTGAATATGACTCTAGTTGAGCCAGCTGTTCTTCATGACCACATACATTGTGGATCAGGCTGGTGAAAAATCAGTGGCTATTTCCACAGACCAAGACACACAAAGTGACCTATACAGTATTGCTGTATGCTTACATCTTTGAGACACACACATTTAAAGGCCATTAACTTCCATGTTTCTAGTCCCATGATGTCCAATTACTATCCAGACATTAGCATACAATGTAAGGACGTTTTGACGAGAAACACCAAGGACATAACTGGGTTAAGAGCCATAGACACAGAAAAAAAATGGCTGAATGGTTTCTCATTTTCTTTCTTTCTTTTGTTTTTTCTTACAAATGGATGCATAAAATTCAAAAGTTAAATTACTGTACATAAAAAAGAAAGTCACAAAACACTATTAGTGCTGGTTGATGAGTTCATTACAGCTAGGTTTTTTTTTGTTGTCATTAAAACTAGTCTACTTGTTGGTGAGACACCAAGGCCACGATAAACACATCAATGACCAACGGAGTAAAGCTTCCTACTTTTGGTGTGCGAGAGGCCATAAATCCCAACATACTCTTCAAATATTAAAAAAAAAAAAAAAAAAAGACAACAATGCAATATAATATCTTTGGGTATGTTCGTATCTATTACACATTTAGATCTTCTAAATCCAAATGAAAATAAAGTTTAGGGAGTTTAAATATCAAAAAAATCGCATGTAAAATGTTCAAAATGCAAGGCTTGGTTCCTCGGGTCGCGTTTGTAAACCTCCTTTTGAAGGGGTGAACTAAAGCAGGAACCTTTGTTCCAGTAAGGCCACATCTAATGGTAGAGCACGTCTTCAAATCATCTGTTTTTGAGAGCATTTCAAATTTTAGAAAATGCAAATGGAAGTTCAGGAAGACAAAAAACTGGATTTTAGAAAGGAAACATTATAAAACAGCACTAAAACTGTCGGAGTCTAAACTCGTGTCAGAACTTGTCCGTTACAAATATCCAACTACAGTGAACTTTCTGATATTGATATGTGAGATCCTACTTGTGCCCTAGAGCAAATGAACTACACTATGGCTACCGTATCGAAGAGACACGTTGCATCCAAATCTTCTATATTGTGTTTTCTGGTTTATATTCCCAATAAGACATAGAAAGATGGCATTGTTCCTTTTGTGAGATCTAGACACATCAATGATGAAATGCTTAAAGGAAGCGTAGCGCATATTGTAATGCAGGCAAGGCAGAGGCATTGCTTAAAGCTCTTTTCTTTTTAAAGACTTCATTAAAAACGAATGATAAAAACAGGCCCTCTGAGTTTCTCCCAAATGAAAAATTAAAAACTAAAACCGTATGGAAAAAAAAAAAAAAAAAAACGGTATTACAAAATACAAAGTATCAAAACTGAAGGAGTCCAAGCGAACAGATGTATATGAAAGTATCTATATACAGAAAAAAAAAGAGGTGAAGCTCAGAGGAGGAATAGAACCTATTTGGTAACAAAAGTGTACTATAATGTTTGATATAAAAAAGGTATGAAGAAAAAAAAAAATGTACCTTTACTAAAGCTTATACAATATCCTTGGTCCAGAAAAACTGTCATCTCACAATTTCAATGTGACCCTTTACCTAAGAGTTTAGACCTCCCAGGTTATGATACATCTTACCCAATCGCACACACAGACCAGAAGGAAGAAACATAGGAGACTAAACATAATTTTCAGTCGACACATTTTGTACATGGCTGATGTATCATTGCTGTGGTCTTATCTCCATGTCTTCGACACCTGCTGGTGTTTCCTCTCAGGCATTGTCTATTGCTAGCACCAGACCGGCTCCTTAGAGAAAACCACAAGAGGGCACAGGAGAACCATCTCTCAAATATTTTGTCCTCGCCACAGGTTTTGCCTTTTTTGCCCATCTATCCCTTGATTTCCGTCTCCGCTGTTAAGGGATTTTATTTTGAAACTCAATATGCAGCACTTTTACAAATAGTTTGTAGTCTTCTGTTTCACGCATAGTACGTTGTGAGTTTGTGAGCACTGCTGCGTGTGTTATAACACCACAGCCGCGGCTGCATTAGAGGACGACGCTGTGACGGCGTTAGACGTGCTGTTGGCTCCATAGGGTGTCATTTCTCCAGTCCCTCCCGCGCTGTTGCCAGTCGTGGAAAGCAAGCTGGTGTTGCCCGCTCGTAGGATGGCGCCGGCTGCGCTGCAGTGCGGACGGGGGCCGGGTTCGGGCGTGTATGTGAATGTGAGTGTCGTCGAATAGATGATACCGTCGTTTCGGACCAGCGTTACGGGGACCTGCACCGGCTGCCGCACCCACCGCCAGCCCTCTCGGAACGCCGAGATGTCTGGGACGACGCACAGCATGCTCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU577386 True 4543 lncRNA 0.38 3 1702082 1706674

Neighbor

gene id symbol gene type direction distance location
CI01000346_01686133_01686981 NA coding downstream 15095 1685747 ~ 1686987 (-)
CI01000346_01643579_01648514 NA coding downstream 53479 1643459 ~ 1648603 (-)
CI01000346_01607259_01616136 PLAA coding downstream 85742 1607089 ~ 1616340 (-)
CI01000346_01573208_01578869 NA coding downstream 122717 1572863 ~ 1579365 (-)
CI01000346_01557806_01567217 SH3TC1 coding downstream 134865 1557310 ~ 1567217 (-)
CI01000346_01723087_01728859 CCKAR coding upstream 13680 1720354 ~ 1728872 (-)
CI01000346_02050083_02052242 NA coding upstream 343093 2049767 ~ 2052666 (-)
G503439 NA non-coding downstream 6078 1695554 ~ 1696004 (-)
G503432 NA non-coding downstream 66360 1635513 ~ 1635722 (-)
G503420 NA non-coding downstream 80377 1621497 ~ 1621705 (-)
G503408 NA non-coding downstream 118957 1582888 ~ 1583125 (-)
G503388 NA non-coding downstream 162431 1539001 ~ 1539651 (-)
G503477 NA non-coding upstream 26725 1733399 ~ 1737931 (-)
G503483 NA non-coding upstream 35190 1741864 ~ 1749820 (-)
G503487 NA non-coding upstream 43305 1749979 ~ 1750228 (-)
G503488 NA non-coding upstream 43734 1750408 ~ 1750682 (-)
G503491 NA non-coding upstream 48315 1754989 ~ 1757002 (-)
CI01000346_01361384_01364507 RWDD4, RWDD other downstream 337075 1361089 ~ 1366113 (-)
G502676 NA other downstream 1629647 68756 ~ 72435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G102143 NA non-coding NC_048565.1 CM023219.2 92819300 ~ 92819873 (-)
bowfin (Amia calva) G91386 LOC106577485 non-coding CM030131.1 CM030131.1 11408294 ~ 11415102 (+)