CI01000353_00550322_00556282 (HNRNPA3, HNRNPA3.S, RO32)


Basic Information

Item Value
gene id CI01000353_00550322_00556282
gene name HNRNPA3, HNRNPA3.S, RO32
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000353
NCBI id null
chromosome length 2149660
location 550322 ~ 556282 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000353_00550322_00556282.mRNA
GGTCGAGTCAGTAAGGAGCCGGAGCAGCTCAGGAAGCTGTTCATTGGTGGACTCAGTTTTGAGACCACAGAGGACAGTTTACGAGCTCACTTTGAGCAATGGGGCAAACTCACAGACTGCGTGGTAATGAGAGATCCAGCAAACAAACGCTCGCGAGGTTTCGGCTTTGTGACGTATTCCTGTGTCTCGGAGGTTGACGCTGCTATGGCAGCACGGCCACACAAAGTGGACGGTCGAGTCGTTGAGCCCAAACGGGCCGTCTCCAGAGAGGACTCTAATAAACCTGGAGCCCATCTGACAGTGAAGAAGATCTTTGTGGGTGGAATCAAGGAAGACACAGATGAGTATCACATCCGAGAGTACTTTGAGCCATATGGGAAAATTGAGACCATCGATATCATGGAGGAGCGTTCGACGGGGAAAAAGAGAGGATTCTGCTTCGTCACCTTCGATGATCATGATACTGTGGATAAAATTGTTGCACAAAAATATCACACAATCAACTCGCATAACTGTGAAGTAAGAAAAGCACTTCCAAAGCAGGAGATGCAAGCTGTTTCTAATCAGAGATATCGCGGTGGAGGTGGAGGTGGGGATAATTTCATGGGCAGAGGAGGAAACTTCGGAGGTGACAACTTTGGCAGAGGGGGTAACTGTGGTGGGGGTCCTGGCTATGGAGGGGGCCGTGGAGGGTACGGTGGAGGTCCTGGATTTGGTAACCAAGGCGGAGGAGGCTTCGGAGGATATGACAACTACAATGATGGCAGGAATTTTGGAG

Function

symbol description
hnrnpa3 Predicted to enable RNA binding activity. Predicted to be located in viral nucleocapsid. Orthologous to human HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3).

GO:      GO:0030529, GO:0019013, GO:0019012, GO:0003676, GO:0000166

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000353_00550322_00556282.mRNA True 778 mRNA 0.50 6 550322 556282

Neighbor

gene id symbol gene type direction distance location
CI01000353_00364228_00392217 NA coding upstream 157517 363976 ~ 392805 (+)
CI01000353_00359049_00360435 HOXD3A, HOXD3 coding upstream 189278 358744 ~ 361044 (+)
CI01000353_00347575_00348725 HOXD4A, HOXD4, HXD4A, HOXD4AB coding upstream 201109 346833 ~ 349213 (+)
CI01000353_00334136_00335255 HOXD9A coding upstream 214274 333717 ~ 336048 (+)
CI01000353_00329672_00331600 HOXD10A, HOXD10 coding upstream 218234 329540 ~ 332088 (+)
CI01000353_00609948_00648017 NA coding downstream 53223 609505 ~ 648165 (+)
CI01000353_00752571_00760024 NA coding downstream 196289 752571 ~ 760304 (+)
CI01000353_00779223_00786536 RBM45 coding downstream 222941 779223 ~ 786655 (+)
CI01000353_00818227_00860645 OSBPL6 coding downstream 261945 818227 ~ 864243 (+)
CI01000353_00909159_00930428 NA coding downstream 352877 909159 ~ 930487 (+)
G511959 NA non-coding upstream 10661 539431 ~ 539661 (+)
G511901 NA non-coding upstream 162274 387717 ~ 388048 (+)
G511883 NA non-coding upstream 258036 292061 ~ 292286 (+)
G511840 NA non-coding upstream 382340 167724 ~ 167982 (+)
G511776 NA non-coding upstream 382949 69315 ~ 167373 (+)
G511938 NA non-coding downstream 2034 558316 ~ 561812 (+)
G511941 NA non-coding downstream 29033 585315 ~ 586406 (+)
G511962 NA non-coding downstream 43303 599585 ~ 599817 (+)
G511963 NA non-coding downstream 43934 600216 ~ 600485 (+)
G511964 NA non-coding downstream 44271 600553 ~ 600772 (+)
G511885 NA other upstream 13734 297647 ~ 536588 (+)
CI01000353_01429207_01429677 DBI, BRAFLDRAFT_98944 other downstream 869389 1429207 ~ 1430652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037562 hnrnpa3 coding NC_007120.7 CM002893.2 1692926 ~ 1703801 (-)
bowfin (Amia calva) AMCG00008814 hnrnpa1 coding CM030126.1 CM030126.1 12654567 ~ 12659732 (+)