G511962


Basic Information

Item Value
gene id G511962
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000353
NCBI id null
chromosome length 2149660
location 599585 ~ 599817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU587041
GGATGACAAAAAGTTTTAAAAGTTACATTTTTAGTCTGGTCTGCCTTAGCGGTCTAAGAACGCTCGTCAATGTCAAAATGATTGAGATGGCCAATCAAATTAAAAAGTAGGCGGAGTTTACGTTCTCTCTTTGCTCGTGCACACAGTCTTCACAGCACAGACGGGCGCGTCAACCGATCGCTTAACGCCGTTGCGGAGGTTCTATTTTTCCGGTAAAATCACAAAACAAATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU587041 True 233 lncRNA 0.43 1 599585 599817

Neighbor

gene id symbol gene type direction distance location
CI01000353_00550322_00556282 HNRNPA3, HNRNPA3.S, RO32 coding upstream 43303 550322 ~ 556282 (+)
CI01000353_00364228_00392217 NA coding upstream 206780 363976 ~ 392805 (+)
CI01000353_00359049_00360435 HOXD3A, HOXD3 coding upstream 238541 358744 ~ 361044 (+)
CI01000353_00347575_00348725 HOXD4A, HOXD4, HXD4A, HOXD4AB coding upstream 250372 346833 ~ 349213 (+)
CI01000353_00334136_00335255 HOXD9A coding upstream 263537 333717 ~ 336048 (+)
CI01000353_00609948_00648017 NA coding downstream 9688 609505 ~ 648165 (+)
CI01000353_00752571_00760024 NA coding downstream 152754 752571 ~ 760304 (+)
CI01000353_00779223_00786536 RBM45 coding downstream 179406 779223 ~ 786655 (+)
CI01000353_00818227_00860645 OSBPL6 coding downstream 218410 818227 ~ 864243 (+)
CI01000353_00909159_00930428 NA coding downstream 309342 909159 ~ 930487 (+)
G511941 NA non-coding upstream 13179 585315 ~ 586406 (+)
G511938 NA non-coding upstream 37773 558316 ~ 561812 (+)
G511959 NA non-coding upstream 59924 539431 ~ 539661 (+)
G511901 NA non-coding upstream 211537 387717 ~ 388048 (+)
G511883 NA non-coding upstream 307299 292061 ~ 292286 (+)
G511963 NA non-coding downstream 399 600216 ~ 600485 (+)
G511964 NA non-coding downstream 736 600553 ~ 600772 (+)
G511979 NA non-coding downstream 92165 691982 ~ 693587 (+)
G511991 NA non-coding downstream 265015 864832 ~ 865219 (+)
G511988 NA non-coding downstream 275591 875408 ~ 883198 (+)
G511885 NA other upstream 62997 297647 ~ 536588 (+)
CI01000353_01429207_01429677 DBI, BRAFLDRAFT_98944 other downstream 825854 1429207 ~ 1430652 (+)

Expression


Co-expression Network