XLOC_013918 (CU628002.1)


Basic Information

Item Value
gene id XLOC_013918
gene name CU628002.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 11013622 ~ 11014858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027811
CTAATAAGGACTGAGGAATCTAAAGTCTGCGGGGAGTAGTGTGGTCGAATAAAGCAGATTCCTCTCGAGCAGCGTAGTGGACCGAGCCGCGAAGAAGAGAAGGAGGAAAAAAAAGTCCAAGGCACCAACGCCCCGCCAACAAGTCAAACGCAGAGCGAGTGGAAGTAACGTGAGGATCAGATGTTTCACGCGCACGCACGGCTTTTCACCACTACTGCGATGCGTTCTGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096894

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027811 True 232 lncRNA 0.53 2 11013622 11014858

Neighbor

gene id symbol gene type direction distance location
XLOC_013917 si:ch1073-70f20.1 coding upstream 26961 10979983 ~ 10986661 (+)
XLOC_013916 si:ch73-347e22.8 coding upstream 62783 10937932 ~ 10950839 (+)
XLOC_013915 si:ch73-347e22.4 coding upstream 141153 10860485 ~ 10872469 (+)
XLOC_013914 apoea coding upstream 153928 10855158 ~ 10859694 (+)
XLOC_013913 apoa4a coding upstream 162788 10845953 ~ 10850834 (+)
XLOC_013919 si:ch73-109i22.2 coding downstream 199149 11214007 ~ 11230837 (+)
XLOC_013920 si:ch73-171o20.1 coding downstream 241759 11256617 ~ 11264040 (+)
XLOC_013921 si:ch73-171o20.2 coding downstream 249726 11264584 ~ 11268339 (+)
XLOC_013922 CU928061.1 coding downstream 263555 11278413 ~ 11278529 (+)
XLOC_013923 SLC66A2 coding downstream 417472 11432330 ~ 11490549 (+)
XLOC_013906 CR384101.1 non-coding upstream 446136 10567371 ~ 10567486 (+)
XLOC_013895 NA non-coding upstream 1146900 9838182 ~ 9866722 (+)
XLOC_013893 BX927218.1 non-coding upstream 1256606 9751075 ~ 9757016 (+)
XLOC_013889 dre-mir-125a-2 non-coding upstream 1569744 9443772 ~ 9443878 (+)
XLOC_013888 dre-let-7d-2 non-coding upstream 1583678 9429857 ~ 9429944 (+)
XLOC_013928 NA non-coding downstream 1280592 12295450 ~ 12300891 (+)
XLOC_013935 AL844521.1 non-coding downstream 1929992 12944850 ~ 12944966 (+)
XLOC_013937 NA non-coding downstream 2100407 13115265 ~ 13115526 (+)
XLOC_013938 NA non-coding downstream 2215525 13230383 ~ 13249249 (+)

Expression


Co-expression Network