CI01000360_00045139_00056179 (GABRR1)


Basic Information

Item Value
gene id CI01000360_00045139_00056179
gene name GABRR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000360
NCBI id null
chromosome length 778440
location 45139 ~ 56346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000360_00045139_00056179.mRNA
ATTACGGAGAGAAACAACACGAGTGGATGGAGGAAGCCACAAGTCTGGCAGCCCGATCTTCAGAAGAAGTCCAGACATGACAAAGTCTCCTATGACCAAATCAGAGCAGCTGTTGAGGATAGATGACCATGATTTTACAATGAGACCAGCATTTGGAGGACCTCCGATTCCAGTAGGTGTGGATGTTCAGGTTGAAAGTCTTGACACCATCTCTGAGGTTGATATGGATTTTACGATGACACTGTATTTAAGGCATTACTGGAAAGATGAGCGCTTGTCTTTCCCGAGCACCAACAATCAAAGCATGACATTCGACAGCCGGCTGGTGAAGAAGATCTGGGTGCCCGACATGTTCTTTGTTCATTCCAAAAGATCTTTCATCCATGACACAACGACAGACAATGTGATGTTACGAGTGTATCCAGACGGCAACGTCCTCTACAGTCTGAGAGTGACTGTCACTGCCATGTGTAACATGGACCTGAGTCGATTTCCACTAGACACACAGACATGCTCACTAGAGATCGAGAGCTATGCTTACACTGACGACGATCTCATGCTTTACTGGAAGAAGGGTAACGAGTCGCTGAACACCGACGACAGGATTTCTCTGTCTCAGTTTCTCATCCAGAAGTTCCACACCACAACTAAGCTTGCTTTCTACAGCAGCACAGGCTGGTATAATCGCCTCTACATTCACTTCACTCTTCGTCGACACATCTTCTTCTTCCTGCTGCAAACGTACTTCCCGGCGACGCTGATGGTCATGCTGTCCTGGGTGTCATTCTGGATCGACCGCAGAGCTGTGCCTGCAAGAGTACCTCTTGGCATCACGACGGTTCTTACGATGTCCACCATCATCACCGGAGTCAATGCCTCCATGCCCAGAGTCTCCTACATCAAAGCTGTGGACATTTACCTGTGGGTCAGCTTCGTCTTTGTCTTCCTCTCTGTTATCGAGTACGCAGCCGTCAATTATCTGACCACCGTACAGGAGCGCAGAGAGAGGAAACTCAGGAACCAATTGCCTTGCACATGTGGAATAGCAAACCCAGACGAGGACATGATGATGACCACATGCTACAGCGACGTGGATCCCAACACAACGGGGACTTACGGGATGCCTGAGAACGGCGGGAGGCAGGAGAGGATCCTGGCCCAGCTGACCCTCGCCGACGGTCAGAGTCAAAGTCGGGTCAAAACCTCACGGGGATACGTCAACATCTGGATAGACACTCATGCCATAGACAAGTACTCACGAGTGATCTTTCCCGGCGCGTACACCCTCTTTAACATCATCTACTGGTCCATCTACTCCTAACTGGATCAGTCCAATGAAGCGGCTCTGAGAACGACTGATAACTGGATCTCTCTGCCTTCTTGATCCAGTATCTCAAACTCTTCTTTTTTTGTGCGTGTTGTATGTTTATTTAACGACAGCAACTTTTTGAGGACATATTTGTTTGAATAATCTGTTATTCCTCACAA

Function

symbol description
gabrr1 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Acts upstream of or within with a positive effect on negative regulation of G0 to G1 transition. Acts upstream of or within with a negative effect on regeneration. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in diencephalon and eye. Orthologous to human GABRR1 (gamma-aminobutyric acid type A receptor subunit rho1).

NR:

description
gamma-aminobutyric-acid receptor rho-1A subunit precursor

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000360_00045139_00056179.mRNA True 1488 mRNA 0.48 9 45139 56346

Neighbor

gene id symbol gene type direction distance location
CI01000360_00032742_00035125 NA coding upstream 9990 32742 ~ 35149 (+)
CI01000360_00239322_00269102 MEIS2 coding downstream 182780 239126 ~ 269188 (+)
CI01000360_00276724_00299803 MEIS1 coding downstream 219991 276337 ~ 299868 (+)
CI01000360_00313760_00316560 MEIS2 coding downstream 256925 313271 ~ 316840 (+)
CI01000360_00461890_00465387 NA coding downstream 405357 461703 ~ 465569 (+)
CI01000360_00577462_00621640 DPH6 coding downstream 521116 577462 ~ 621645 (+)
G517989 NA non-coding downstream 7981 64327 ~ 100900 (+)
G518013 NA non-coding downstream 56348 112694 ~ 113062 (+)
G518105 NA non-coding downstream 115582 171928 ~ 172148 (+)
G518118 NA non-coding downstream 146167 202513 ~ 202937 (+)
G518142 NA non-coding downstream 235906 292252 ~ 392209 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012461 GABRR1 coding NC_007128.7 CM002901.2 53273684 ~ 53282539 (-)
eurasian perch (Perca fluviatilis) G1786 NA non-coding NC_053112.1 CM020909.1 5375578 ~ 5377774 (+)
bowfin (Amia calva) AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 misc CM030121.1 CM030121.1 11921991 ~ 11939783 (-)