G1786


Basic Information

Item Value
gene id G1786
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5375578 ~ 5377774 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2479
CGAATTAATAAGTCGTTATCACGagataacaaagatgtttttatcGAGGTAGCGAATTAATAAGTCGTTATCGCAagataacaaagatgtttttatcGAGATAGCGAATTAATAAGTTGTTATCGCGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTACCGCGagataacaaagatgtttttatcGAGGTAGCGAATTAATAAGTCGTTATCGCGAGATAACAAAGATGGTTTTATCGAGATAGCGAATTAATAAGTCGTTATCACGAGATAACAgtgcatgaaaaataaaaataaaatccatggCCGTTCTCGGCTTCTGTACGATACAAACATACGCTTGcgtaaaaaaaatttttcttcttcagGCGCGGCAGCATTTGCGCTTCtgcacattttaacattttaaaaagagtcGGAAACATTCCCTGCTGTAAGTGAAGAACGTAGTTTTTAACCTGTGCAGCTGTTTACTGTTGCCTTGTTTTGGTTATTTTAAAGCTGAATTATGGGTCTAATATGAGTAGATGATCACACTCCAGTCTGGTGTTACACACTATAACTGTACTTCAGACACGCTGAAACCCTTCAGgatgttttatgcttctgtgtcAACTCCATGTGACCCTTTTCGGAGTTCATATTTtggggcgaacgtgaactgtaacgtactaggggtggggggaaaaatcgatacagcatagtatcgcgatatttttcgtggcaatactgtatcgatacacaga
>TU2480
tgtcacctttttcagcccttctgagtttgcaggtatgcaaAACCTAAACCAGTTCAAACTGTCTGTTGATTTGTCTAAGGTGTAAAAGCTGAAGCAGACAAGCTACACTACACTCAAATGACActaaaaatgcattttctaaatgtgtgttttaatgtacaACGTAAAGTAACAAATAATAACGCTCAAAAGTACAAAACCTACCGACTGCTACACGGCTCAGTTTAAGAGTTcgtggagacaaaaaaaaaatcgtattACAATAAACTTTTCACGTAATGCACGATGCTACGGAAGCCGAGAACGGCCAtggattttatttaaattttttcatgCAGTTATCTCGTGATAACGACTTTATTAAGTCGTTAACGAGATAACAAAGATGGTTTTAATCGAGATGACGAATTAATAAGTCGTTATCGCGAGATAACAGAGATGTTTTTATCGAGATAGCGAATTAATAAGTCGTTATCGCGAGATAACAGAGATGTTTTTATCGAGATAGCGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGATAGCGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTACCGCGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTATAATGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTATCACGAGATAGCAAAGATGTTTTTATCGAGATAGCGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGGTAGCGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGATAGCGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTACCGCGagataacaaagatgtttttatcGAGATGATGAATTAATAAGTCGTTATAATGagataacaaagatgtttttatcGAGATGATGAATTAATAAGTCGTTATAATGAgataaagatgtttttatcGAGATGACGAATTAATAAGTCGTTATAATGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTACCGCGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTACCACGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTATAATGagataacaaagatgtttttatcGAGATGACGAATTAATAAGTCGTTATCGCGagataacaaagatgtttttatcGAGGTAGCGAATTAATAAGTCGTTATCGCGAGATAACAAAGATGGTTTTATCGAGATAGCGAATTAATAAGTCGTTATCACGAGATAACAgtgcatgaaaaataaaaataaaatccatggCCGTTCTCGGCTTCTGTACGATACAAACATACGCTTGcgtaaaaaaaatttttcttcttcagGCGCGGCAGCATTTGCGCTTCtgcacattttaacattttaaaaagagtcGGAAACATTCCCTGCTGTAAGTGAAGAACGTAGTTTTTAACCTGTGCAGCTGTTTACTGTTGCCTTGTTTTGGTTATTTTAAAGCTGAATTATGGGTCTAATATGAGTAGATGATCACACTCCAGTCTGGTGTTACACACTATAACTGTACTTCAGACACGCTGAAACCCTTCAGgatgttttatgcttctgtgtcAACTCCATGTGACCCTTTTCGGAGTTCATATTTtggggcgaacgtgaactgtaacgtactaggggtggggggaaaaatcgatacagcatagtatcgcgatatttttcgtggcaatactgtatcgatacacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2479 False 761 lncRNA 0.46 2 5376963 5377774
TU2480 True 1890 lncRNA 0.35 2 5375578 5377774

Neighbor

gene id symbol gene type direction distance location
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding upstream 3808 5361351 ~ 5371770 (+)
LOC120563443 NA coding upstream 178461 5180196 ~ 5197117 (+)
LOC120563472 NA coding upstream 195836 5158881 ~ 5179742 (+)
LOC120563603 stxbp6 coding upstream 426466 4947658 ~ 4949112 (+)
LOC120563657 NA coding upstream 436108 4856686 ~ 4939470 (+)
ndufaf5 ndufaf5 coding downstream 123258 5501032 ~ 5518108 (+)
LOC120564466 NA coding downstream 211895 5589669 ~ 5591008 (+)
LOC120564476 NA coding downstream 228680 5606454 ~ 5607801 (+)
LOC120563910 NA coding downstream 412523 5790297 ~ 5803234 (+)
prokr1a LOC103383410,LOC101078632 coding downstream 661437 6039211 ~ 6058589 (+)
G1772 NA non-coding upstream 29679 5340592 ~ 5345899 (+)
G1773 LOC108251774,LOC106535048,LOC107394211 non-coding upstream 35107 5335347 ~ 5340471 (+)
G1782 NA non-coding upstream 51089 5324236 ~ 5324489 (+)
G1780 NA non-coding upstream 56274 5318782 ~ 5319304 (+)
G1759 NA non-coding upstream 78913 5284816 ~ 5296665 (+)
G1774 NA non-coding downstream 366 5378140 ~ 5379265 (+)
G1787 NA non-coding downstream 23757 5401531 ~ 5779880 (+)
G1791 NA non-coding downstream 96659 5474433 ~ 5475665 (+)
G1792 NA non-coding downstream 105768 5483542 ~ 5487749 (+)
G1813 NA non-coding downstream 259926 5637700 ~ 5651160 (+)
G1775 NA other upstream 671 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 47661 5235346 ~ 5327917 (+)
G1756 NA other upstream 152834 5218068 ~ 5222744 (+)
G1600 NA other upstream 336864 4977783 ~ 5038714 (+)
G1487 LOC103369331 other upstream 915174 4455207 ~ 4460404 (+)
acaa1 acaa1,LOC102793903 other downstream 9619 5387393 ~ 5471409 (+)
snrpb2 snrpb2 other downstream 498773 5876547 ~ 5916374 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 1007827 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 1029626 6407400 ~ 6437217 (+)
G1973 NA other downstream 1154667 6532441 ~ 6534370 (+)

Expression


Co-expression Network