aftpha (LOC102296338,LOC102796226,LOC101483123,LOC102200161)


Basic Information

Item Value
gene id aftpha
gene name LOC102296338,LOC102796226,LOC101483123,LOC102200161
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6407400 ~ 6437217 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2728
cactttaaaagtaccggttcggcatcgtaaaggtccaaacggtacccagccctgtctctctctctctgtttgtctctgctGGGTCTCTCAGGTCGGTGCGTGGCAGCGTGTGGACGCAGCTGCAGGACATCCACGAGGCGCTGGGCCTCAGATACCAGTGGGGGGGCTCCTACTGCAACAAAGCACTACTCTGCTGCCTGGGCATCGACACCCGGAACATTCTGTTCACGGGGCAGAAGAAGCAGCCGGTCATCGTGCCCATGTACGCCGCCAGCCTGGGGATGCTGGAACCAACCAAAGAGCCTGTGAAGCCCGTCTCTGCAGCAGAGATGATCGCTTCGATAGCGCAGGCGCCTCCGGTGGCTCCAGAGAAAAGCTCCTGTCCCTCAGACTCAGTCCAGCAGGAGGCGCTCCCACCCGTCCAGTTCGACTGGAGCAGCAGTGGCCTTACCAACCCTCTGGATGGTAGGTGACTCCTCCCTCCCatccctccctgcctcc
>TU2729
cactttaaaagtaccggttcggcatcgtaaaggtccaaacggtacccagccctgtctctctctctctgtttgtctctgctGGGTCTCTCAGGTCGGTGCGTGGCAGCGTGTGGACGCAGCTGCAGGACATCCACGAGGCGCTGGGCCTCAGATACCAGTGGGGGGGCTCCTACTGCAACAAAGCACTACTCTGCTGCCTGGGCATCGACACCCGGAACATTCTGTTCACGGGGCAGAAGAAGCAGCCGGTCATCGTGCCCATGTACGCCGCCAGCCTGGGGATGCTGGAACCAACCAAAGAGCCTGTGAAGCCCGTCTCTGCAGCAGAGATGATCGCTTCGATAGCGCAGGCGCCTCCGGTGGCTCCAGAGAAAAGCTCCTGTCCCTCAGACTCAGTCCAGGAGGCGCTCCCACCCGTCCAGTTCGACTGGAGCAGCAGTGGCCTTACCAACCCTCTGGATGGTAGGTGACTCCTCCCTCCCatccctccctgcctcc
>XM_039810208.1
TGTTAGGCATGGGAAGTTTTGGGAGAGCCAGAAACGGAACTAACGGAAAGCCGACCTGCCACCGCGGTGCATGCTGGGTGATATTCAGGCAGGGTTAGGTAGCGGTAGCAGCCGGCTGACTCAACCTTCAGtttctgcttcagtttcagccGTCCTGCTCCCTTCTGCTGCCTCAATCCGACAACATATGGACGGCTCTGTCTTTAACTGAGTCATGGACATCAACGGACCACATCTCACGGTGTAGCCAGGAGGACCCGTGTCGATTTGTGCCGGAGCGCCATGGAGCCCGACGTGATCCGCATGTACTCGTCGTCTCCGCCGCCGATGGAGGACGCCGCGGAGGAAGACGACAACGAGTTCGGGGACTTCGACACCTTCTCCGGCGTCCCGAACAGCATCAGCTTCACGGAGTTCGACACCCCGACCACTTTCAACCAGACCCAGGCCCTGACGGCCACCTCGCCGCCCGAGCTCCTCCTGCTCAACAACGGGCTCGCCCGTCGCCACGGCGGCGGCGGCTCGGCTAACGGAGCAACCCGCGCCCCGAGCGGCGAGCCGTCCAAGGCTAACGGCGTTGCGTTGGGCTGCCCCCCTGAAAGAACTGCCGAAACGAAAAgggctctctcctcctcaggcCCTCTGGGTTTCTCCGTGAGCGACGCCGCCACGCCCGGCGTGGAAGAGCGCAACGGCGGAGACGCCGCGGAGGTGCTAACGAACGGGTTCGCCACCTCTGACGTTCAGGGAAGCCCCTCCTCCTCGCAGAACTCTGTCCACTCGCATATAAAAGAAGGAGCGTCCACAGAGGACACGGGCAGCATTCCCGAGGACGATTTTGCAGACTTTGCCGCTTTTTCCGACGCCGAAGGACACTGTAGTACAGAACGGGGAACGACTTCAGAGGACGATGTCAGGGACACAAACAGAACTGGACCCGACGAGTCCGGCGGCGCCGATTCTGTCGTGTCGGTCTCGGCCGCCGAGGCTCGGGGCGGCTCGCGCACGGACGCCGATGCCGATTCGGGGCGACAAAGGGACGTAGCCTTCGCGCAGGAGCGCTTAGCCTCGGAGGGAGCGTGTGCTAACGGGCCGGTAGCGCTGAACGGGGCGGACGCGGCCGATTCCGGAGACGCGGCGTGCTGCTACGGCGAGAAAGACCTCTCGTCGCCGGACGCCGCCGGGACGCCGTGGGACGGGAAGGGCTCCGGTAACgagacggagacggagacggagacgTCGCTGGGCCGGCCGCTGTCCACGGACGCTCTGGAGGAGTTCGGAGACACGAGCACCACCGGCTCGGCGCCGTCTCCGCTGCTCCTCCACGGCGAGACCGCCACGCCCGGCGACCACAGCCAGCTGGCGgaggacgacgacgacgacgaagATTTCGGGGACTTCGGAGATGCGGGCGCGTTCGGCGCCGGTCAGGGCTTCGCGGACTTCGAGCGGCTGGACGTTCAGCGGGAGCAAACCGGGCCGGGCAATGCCGGAAAAACGCCCGAGGAGGAGGCGAGACTTCCCGTCAGCGACAGTTTCGGGAATTTCAGCTCGGCGCCGGCCGGAGACGGCGGCGCGCAGGGGTGGGCAGCGTTGGGCGAAAGCAGCAGGCGGACGGACGGAGAGTCCTGGAGCGGCGTTACGCGCAGGAGACAAGTGTTTTGCGCTTCCGCCCGGGAGAAGAGGcgggaagggaggaggaggttagaggaggaagaggaggagtggCATCAAAGTGAACATCCTGCAGTCAGCGAGGAAACCAgcacgacagacagacagtcggTAAGAACTGCTCCGACTGGGAAGGTTTTTGTAGTAGTTTtgagtaggggtCCAGGGCAGGGCAAGGGCCAGGGCAGACCAGGGCCAGGGCAGACCAGGGCAGACCAGGGCCAGGGCCAGGGCAAGGGCCAGGGCAGACCAGGGCAGACCAGGGCCAGGGCAGACCAGACCAGGCCAGACCAGGGCAAGGGTAAGGGCCAGGGCCAGAGCAGACCAGGCCAGACCAGGGCCAGGGCCAGGGCAAGGATTGCCACCACTTTGCTGGTCATGGTCGACAGCGACCCCAGCCGCGGGCCAAGACTGGCGGTGCGCAGCGGGATGaaggtccaaacggtacccagccctgtctctctctctctgtttgtctctgctGGGTCTCTCAGGTCGGTGCGTGGCAGCGTGTGGACGCAGCTGCAGGACATCCACGAGGCGCTGGGCCTCAGATACCAGTGGGGGGGCTCCTACTGCAACAAAGCACTACTCTGCTGCCTGGGCATCGACACCCGGAACATTCTGTTCACGGGGCAGAAGAAGCAGCCGGTCATCGTGCCCATGTACGCCGCCAGCCTGGGGATGCTGGAACCAACCAAAGAGCCTGTGAAGCCCGTCTCTGCAGCAGAGATGATCGCTTCGATAGCGCAGGCGCCTCCGGTGGCTCCAGAGAAAAGCTCCTGTCCCTCAGACTCAGTCCAGCAGGAGGCGCTCCCACCCGTCCAGTTCGACTGGAGCAGCAGTGGCCTTACCAACCCTCTGGATGGTAGGTGACTCCTCCCTCCCatccctccctgcctccctccttccctccatccCTGCCTCCTGCCCGCTCTCGTCTTGTTTCCCTCTTTTCTAACCCCTCGTAGTGTTTCCTGAAAGTCTCTGTACATGCTTGGGTCACAAAGTCACCAGCCGCTCCTGCTGGttcacagccaatcagaggccagACGGAGAcactggcccaatcccaaagtcctGACTCGCAGACTCACGAAATTCGCGAAGGGTCCTCAGGGTCGTCCCTGTCACAACCTGGCTCAAAGGCCACGACAAAAGAGGGAGCGAGGCATCGTAAATCATCAAAAGtgattttatttaacaaaagaatGAACTCAACAGaacttaaaggtatagtggaggattttcccgaat

Function

NR:

description
PREDICTED: aftiphilin-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2728 False 501 TUCP 0.58 4 6428831 6436864
TU2729 False 498 TUCP 0.44 4 6428831 6436864
XM_039810208.1 True 2934 mRNA 0.63 8 6407400 6437217

Neighbor

gene id symbol gene type direction distance location
LOC120569490 LOC105918390 coding upstream 29709 6338303 ~ 6377691 (+)
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding upstream 174801 6163406 ~ 6232599 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding upstream 250009 6148380 ~ 6157391 (+)
LOC120563935 NA coding upstream 261373 6132635 ~ 6146027 (+)
LOC120563973 NA coding upstream 279957 6120394 ~ 6127443 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding downstream 73008 6510225 ~ 6528948 (+)
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding downstream 154219 6591436 ~ 6659319 (+)
LOC120564833 mdha,mdh1,LOC107382285,LOC106536176 coding downstream 258367 6695584 ~ 6722958 (+)
LOC120564849 ugp2,LOC100710204,LOC101487688 coding downstream 290711 6727928 ~ 6763797 (+)
LOC120569765 NA coding downstream 360249 6797466 ~ 6797580 (+)
G1936 NA non-coding upstream 13816 6393076 ~ 6393584 (+)
G1941 NA non-coding upstream 57818 6348780 ~ 6349582 (+)
G1927 NA non-coding upstream 90668 6275673 ~ 6316732 (+)
G1926 NA non-coding upstream 131890 6273836 ~ 6275510 (+)
LOC120568420 NA non-coding upstream 142214 6262324 ~ 6265186 (+)
G1983 NA non-coding downstream 120389 6557606 ~ 6557845 (+)
G2230 NA non-coding downstream 144908 6582125 ~ 6582434 (+)
G2241 NA non-coding downstream 194456 6631673 ~ 6632069 (+)
G2257 NA non-coding downstream 254924 6692141 ~ 6692371 (+)
G2258 NA non-coding downstream 256695 6693912 ~ 6694211 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 4760 6385601 ~ 6402640 (+)
snrpb2 snrpb2 other upstream 491026 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 935991 5387393 ~ 5471409 (+)
G1775 NA other upstream 1032493 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 1079483 5235346 ~ 5327917 (+)
G1973 NA other downstream 95224 6532441 ~ 6534370 (+)
G2530 NA other downstream 1262048 7699265 ~ 7699540 (+)
G2557 NA other downstream 1504330 7941547 ~ 7948253 (+)
G2590 NA other downstream 1652596 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 1964498 8401715 ~ 8415076 (+)

Expression


Co-expression Network