LOC120568420


Basic Information

Item Value
gene id LOC120568420
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6262324 ~ 6265186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640726.1
AGGGATGTTGCTCTATCTGCTCCTCCTCGCTGGATGTGTCTCTCGCAGCTCTACTGACCCAGCTATAGTCAATGTGCTGCAGAACACAAAGGCTACTCTTCCCTGTCCTCATAAGAAGGGGGATGTAACATGGAGCCGCTACAGAAATGGTGACCTTGTGATTCTGGTTACTATCACAAATGGCGAGGAGAAAAGATCTGACAAACGCTACAGTTCTCTGGCAGACAACTCCCTGAACGGAGAGAAGAACTCGCAACAACAACTTGGACAAAAGTGTAGCCGACGAGACGATTTATGAGGAGATGAAACCCTACGAGAAGCAGCCAAGAGGGAGGGACTCCATACAACTGGACGAGCATCAGTGAACCAAAGAGCACCTCCACGCCACCCAGTAATAATCTGAACAGCGCTGTTAAAAAGCCAATAATGAATTAACCCTTTGTGACCATGAACTTGTTTTCCTTCTGGGGAcagaaaattgaaaatgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640726.1 True 490 lncRNA 0.47 3 6262324 6265186

Neighbor

gene id symbol gene type direction distance location
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding upstream 29725 6163406 ~ 6232599 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding upstream 104933 6148380 ~ 6157391 (+)
LOC120563935 NA coding upstream 116297 6132635 ~ 6146027 (+)
LOC120563973 NA coding upstream 134881 6120394 ~ 6127443 (+)
LOC120563868 NA coding upstream 152884 6105145 ~ 6109440 (+)
LOC120569490 LOC105918390 coding downstream 73117 6338303 ~ 6377691 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding downstream 245039 6510225 ~ 6528948 (+)
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding downstream 326250 6591436 ~ 6659319 (+)
LOC120564833 mdha,mdh1,LOC107382285,LOC106536176 coding downstream 430398 6695584 ~ 6722958 (+)
LOC120564849 ugp2,LOC100710204,LOC101487688 coding downstream 462742 6727928 ~ 6763797 (+)
LOC120564462 NA non-coding upstream 595 6258389 ~ 6261729 (+)
G1826 NA non-coding upstream 45268 6208755 ~ 6217056 (+)
G1906 NA non-coding upstream 135791 6125367 ~ 6126533 (+)
G1905 NA non-coding upstream 142795 6119047 ~ 6119529 (+)
G1898 NA non-coding upstream 150723 6111214 ~ 6111601 (+)
G1926 NA non-coding downstream 8650 6273836 ~ 6275510 (+)
G1927 NA non-coding downstream 10487 6275673 ~ 6316732 (+)
G1941 NA non-coding downstream 83594 6348780 ~ 6349582 (+)
G1932 NA non-coding downstream 101303 6366489 ~ 6466386 (+)
G1936 NA non-coding downstream 127890 6393076 ~ 6393584 (+)
snrpb2 snrpb2 other upstream 345950 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 790915 5387393 ~ 5471409 (+)
G1775 NA other upstream 887417 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 934407 5235346 ~ 5327917 (+)
G1756 NA other upstream 1039580 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 120415 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 142214 6407400 ~ 6437217 (+)
G1973 NA other downstream 267255 6532441 ~ 6534370 (+)
G2530 NA other downstream 1434079 7699265 ~ 7699540 (+)
G2557 NA other downstream 1676361 7941547 ~ 7948253 (+)

Expression


Co-expression Network