snrpb2 (snrpb2)


Basic Information

Item Value
gene id snrpb2
gene name snrpb2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5876547 ~ 5916374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2539
TGTTTCATATGagcggtgtggagagagaggagAGACGCCACCATGGATATCCGACCAAATCACACCATTTACATCAACAATATCAATGATAAAGTCAAGAAAGAAGAGCTGAAGCGCTCGCTCTACGCGCTCTTCTCTCAGTTCGGTCAGATAATCGACATCGTGGCCATGAAGACGGCGAAGATGAGGGGACAGGCCTTTGTCGTCTTCAAAGAGCTCGCCGGCGCCACCAACGCACTGAGGCAACTTCAGGGCTTCCCGTTCTACAACAAGCCCATGAGGATACAGTACGCGAAGACTGACTCCGAGGTCATCGCCAAGGTGAAAGGCACGTACGGCGacaaggagaagaagaaggacaagaagaagaaagccCAGGAGGTGTCGGCGGTCAGCCTAATGAAGAAACCGGCAGCGGGATCAGCGGCGCCTGTCAACTCTGCTGCCGTCCAGGTGGTGGACAACCCACCGAACTACATCCTGTTCCTCAACAACCTGCCTGAAGAGACCAACGAGATGATGCTCTCCATGCTGTTCAACCAGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCaca
>XM_039808496.1
CCTCCCGGCCTGCTGGGGGCGCTAGCGGGTAAAGCTCCTTAAAACAGCAACCGGCGCTTCCTGTTTCATATGagcggtgtggagagagaggagACGCCACCATGGATATCCGACCAAATCACACCATTTACATCAACAATATCAATGATAAAGTCAAGAAAGAAGAGCTGAAGCGCTCGCTCTACGCGCTCTTCTCTCAGTTCGGTCAGATAATCGACATCGTGGCCATGAAGACGGCGAAGATGAGGGGACAGGCCTTTGTCGTCTTCAAAGAGCTCGCCGGCGCCACCAACGCACTGAGGCAACTTCAGGGCTTCCCGTTCTACAACAAGCCCATGAGGATACAGTACGCGAAGACTGACTCCGAGGTCATCGCCAAGGTGAAAGGCACGTACGGCGacaaggagaagaagaaggacaagaagaagaaagccCAGGAGGTGTCGGCGGTCAGCCTAATGAAGAAACCGGCAGCGGGATCAGCGGCGCCTGTCAACTCTGCTGCCGTCCAGGTGGTGGACAACCCACCGAACTACATCCTGTTCCTCAACAACCTGCCTGAAGAGACCAACGAGATGATGCTCTCCATGCTGTTCAACCAGTTTCCCGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACAAAGGGGGACATGGTCCCTGGATTACCGTTGAGGTCCCACAGTGATTTTTGTAAATCATACacagctgttttatttttattttctttctactttttttgtttgttggtaAAATTCAGTCCTTTCGTTCACGAGGTCGAGCAGATAATCTCTGGCCTACATCtggttttgtaaaataaaaggcTTTTACATAA

Function

symbol description
snrpb2 Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPB2 (small nuclear ribonucleoprotein polypeptide B2).

NR:

description
U2 small nuclear ribonucleoprotein B''

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11094 SNRPB2; U2 small nuclear ribonucleoprotein B''

RNA

RNA id representative length rna type GC content exon number start site end site
TU2539 False 663 TUCP 0.39 7 5876608 5916374
XM_039808496.1 True 997 mRNA 0.52 7 5876547 5882423

Neighbor

gene id symbol gene type direction distance location
LOC120563910 NA coding upstream 73313 5790297 ~ 5803234 (+)
LOC120564476 NA coding upstream 268746 5606454 ~ 5607801 (+)
LOC120564466 NA coding upstream 285539 5589669 ~ 5591008 (+)
ndufaf5 ndufaf5 coding upstream 358439 5501032 ~ 5518108 (+)
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding upstream 504777 5361351 ~ 5371770 (+)
prokr1a LOC103383410,LOC101078632 coding downstream 122837 6039211 ~ 6058589 (+)
LOC120563871 NA coding downstream 172478 6088852 ~ 6093727 (+)
LOC120563868 NA coding downstream 188771 6105145 ~ 6109440 (+)
LOC120563973 NA coding downstream 204020 6120394 ~ 6127443 (+)
LOC120563935 NA coding downstream 216261 6132635 ~ 6146027 (+)
G1836 NA non-coding upstream 18277 5767143 ~ 5858270 (+)
G1787 NA non-coding upstream 96667 5401531 ~ 5779880 (+)
G1817 NA non-coding upstream 184074 5689969 ~ 5692473 (+)
G1813 NA non-coding upstream 225387 5637700 ~ 5651160 (+)
G1792 NA non-coding upstream 388798 5483542 ~ 5487749 (+)
LOC120564002 NA non-coding downstream 3181 5919555 ~ 5921025 (+)
G1886 LOC104947167 non-coding downstream 25075 5941449 ~ 5955263 (+)
G1840 NA non-coding downstream 43841 5960215 ~ 6016641 (+)
G1833 LOC104946033 non-coding downstream 54851 5971225 ~ 5984068 (+)
G1825 NA non-coding downstream 65791 5982165 ~ 6031193 (+)
acaa1 acaa1,LOC102793903 other upstream 405138 5387393 ~ 5471409 (+)
G1775 NA other upstream 501640 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 548630 5235346 ~ 5327917 (+)
G1756 NA other upstream 653803 5218068 ~ 5222744 (+)
G1600 NA other upstream 837833 4977783 ~ 5038714 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 469227 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 491026 6407400 ~ 6437217 (+)
G1973 NA other downstream 616067 6532441 ~ 6534370 (+)
G2530 NA other downstream 1782891 7699265 ~ 7699540 (+)
G2557 NA other downstream 2025173 7941547 ~ 7948253 (+)

Expression


Co-expression Network