G1886 (LOC104947167)


Basic Information

Item Value
gene id G1886
gene name LOC104947167
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5941449 ~ 5955263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2617
CTCAGGTTTTGTGTTGAAAACCTTTTTACACATCGGACACAGGTACTGGTCATTAGTATCCCAGTGTTCATTGATGCAGTTCTTGCAGAAGTTGTGTCCACATGATGTGACGACAggatcagtgaacacatccagacagatggagcacagaaactgatcttcagATGGCAGATAGTTTGCAGCAGCCATATCTACACAcgtgtgaaagaaaagaaaatcatattaaaatacagttttaattatttaacaaaaaggtgCTTGACTTGCACCAAACTGTGCAAGGAACATTTGAATCATGCTGATAAAGTGAAGCTCGCTACTCTGACAAAACGGCACTGAATATAACCAcacaggggcggagccagacatAGTAAAAATGTGGGGCTCAGCCCGGTTTACAGTGGCTAAattcaatattttaatattttaaaaggtcccatggcatgaaaatcactttatgatgttttttaacattaataggaGTTCCCCtaacctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgaacCCTGGGTATCCCACTAtgactttgagaaaatgaaagctcagatgggccaatcaggaatcttctccttatgaagTCAGGGTTAGCCCGCccagagaaacacagaaatggcacataataaggaaagctcattgtgggactggctctagtggctgtaattctgcagcAAGACTGAATTTAgggaaagagactttagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattagaggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaaaagcagcatgtcataggacctttaagataTTTGAGATAATGGAATGCCTAAAttagttatctttgatcaggatatatcctttaatgccaatctaaaacaaaccctcaagaacagccttttttcatcttcgtaacattgccaaaattaggaatatcctgtctcaaaacgacgctgaaaaactagtccatgcatttgttacgtctaggctggactattgtaattccctattgtcaggttgctcaaataagtctcttaagactctccagctgatccagaatgctgcagcgcgtgttctcacaagaactaagaaaagagatcatatttctcctgtattagcttctctgcattggcttcctgttgaatccaggattgagtttaaagtccttctcttgacctacaaagctctaaatggtctagcaccatcatatctagaagagctcctaataccctattgtcctactagagcactgcgctcccagaatgcagagttactggtggtacctagagtctttaaaagtagaatgggagctagagccttcagttatcaggctcctctcctatggaaccagctcccgatctgggttcggggggcagaaactgtcaacTCATTCAAGAaggaacttaaaactctcctatttgataaagcttatagttagggagtgaggagttgcagtgttcacctaactggcccaactgcttctcttcataattgttagattaataatacataacaaagtagagggaggcaggccagccaagcccgatccggcagggggagagttctaagcccgaaaaagctacctctccttatgacctgtctctcttagttacctgttatagttacgctgttatagttctagactgccgggggacttccttcctttgacacactgagctgctctttcctctccctttctattactgttactattactattactatttgtgtgcagcccgtcccagaaatgcttgttactaatcctaccttctggggagtttactccccggagtccttatgcttttttcccccagtgtatttccttggagaatgttggcaccaagatcctggttccagctgtcgccgtggtcctgctgcactccctgctgagctcagcggtgccctcctgctgaaccctgcagcttcctgctgaaccctgcagcttcctgctacatccagtcactgttccattattaatgtgactactattgccactgttcatcacacccccaaccggcttgtcagacaccgcctaccaagagcctgggtctgtcccaggtttcttcccaagagggagtttttcctcgccactgtcgcactgcttgctcttgagggaattactgtaattgttggaattgttggggctttgtaaattatagagtgtggtctagacctactctatctgtaaagtgtctcgagataacttatgttatgatttgatactataaataaaattgaattgaattgaattaaatatctGCACTGGGTTGCTCCACCTATGGGTAAGTTCAAGCATAGACTAGTTTGAACCTATCTTTAATTAGGTTGGAGTTTACGCGCTACTAACATTTTAAGGGTTTGACCagctctgacctgcggccctttgctctATGtcattccctcctctctctctcctttcatttcctcctgtcaataaagacctaaatatcttaaaaaaaagaaatcacaacagtaaaataccctttttccattcagtggttgttttttgtcgtttaacaatTTGAATGTGTCATTAtgactatttgactgaaatggttatcaaaaataatctcagaaataattcgttatttaaaaaaaaggactaaaatgttttgactaaaactagaccaAGATGACGAGATTTAGTTGGCTAAAACTttactaacaaaaaaagatatgaaaataactaattaggacTAACAAGGacttttggcacaagactaagactaaattaaaattaggtgacaaaattaacactacaccAGCTGAAAAAGGCATAAGTTAAAATTtaacttgtgtgtatgtgttcatgtCTTTGTCTGATTGTTGGTCTGCTATGTTTCTATTGTACATTTTAGCTTAATAGTACTTTTTACTAAATGTATAgtaattgttaaattgttatgtaaatatgtaattttaCTTTCTTTTAAGGTGACTTTTACCATCTGTCTAGGGACGGCAGAGGAAAAATAGCCTTCTGGCATATTGACAGAAATTTATATTAATATGCACTGCacctgtaataaataaataaaaataaaacttaaatcTTACACCTTGCCTTGGTGGATGTAAAGTCTTCT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104947167, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2617 True 3407 lncRNA 0.30 2 5941449 5955263

Neighbor

gene id symbol gene type direction distance location
LOC120563910 NA coding upstream 138215 5790297 ~ 5803234 (+)
LOC120564476 NA coding upstream 333648 5606454 ~ 5607801 (+)
LOC120564466 NA coding upstream 350441 5589669 ~ 5591008 (+)
ndufaf5 ndufaf5 coding upstream 423341 5501032 ~ 5518108 (+)
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding upstream 569679 5361351 ~ 5371770 (+)
prokr1a LOC103383410,LOC101078632 coding downstream 83948 6039211 ~ 6058589 (+)
LOC120563871 NA coding downstream 133589 6088852 ~ 6093727 (+)
LOC120563868 NA coding downstream 149882 6105145 ~ 6109440 (+)
LOC120563973 NA coding downstream 165131 6120394 ~ 6127443 (+)
LOC120563935 NA coding downstream 177372 6132635 ~ 6146027 (+)
LOC120564002 NA non-coding upstream 20424 5919555 ~ 5921025 (+)
G1836 NA non-coding upstream 83179 5767143 ~ 5858270 (+)
G1817 NA non-coding upstream 248976 5689969 ~ 5692473 (+)
G1813 NA non-coding upstream 290289 5637700 ~ 5651160 (+)
G1792 NA non-coding upstream 453700 5483542 ~ 5487749 (+)
G1840 NA non-coding downstream 4952 5960215 ~ 6016641 (+)
G1833 LOC104946033 non-coding downstream 15962 5971225 ~ 5984068 (+)
G1825 NA non-coding downstream 26902 5982165 ~ 6031193 (+)
G1831 LOC103463036 non-coding downstream 49130 6004393 ~ 6022020 (+)
G1897 NA non-coding downstream 84329 6039592 ~ 6130467 (+)
snrpb2 snrpb2 other upstream 25075 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 470040 5387393 ~ 5471409 (+)
G1775 NA other upstream 566542 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 613532 5235346 ~ 5327917 (+)
G1756 NA other upstream 718705 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 430338 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 452137 6407400 ~ 6437217 (+)
G1973 NA other downstream 577178 6532441 ~ 6534370 (+)
G2530 NA other downstream 1744002 7699265 ~ 7699540 (+)
G2557 NA other downstream 1986284 7941547 ~ 7948253 (+)

Expression


Co-expression Network