CI01000365_00326334_00327173


Basic Information

Item Value
gene id CI01000365_00326334_00327173
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 326075 ~ 327600 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000365_00326334_00327173.mRNA
AACCGCCTAAGTTGTGCTAGAGCAGCAGTACTATCGGACCAGGACTGTAATGGCACTGTGCACGCAATGACATATGACAGACTAACAGATATTAACTCTGAGTTTATGTGTTTCTACTTCCAATCTGCAGTTAAAGCAGCTGACAAGATATTTATTTTAACCAAATTTTGCCTCGTCTTTGCCCACGTCTCCTTCATGAAGAAAGTTCAAGATGGTGGTTCAAAAATGTTGATTATAAAGCAATAGTGTCTTGTACATGAATTGTCATGTGACTAACGACGGCAGAATCATTGATGAATCATTCAGAATGATCTGTTTGTGTGTGTGGTTTTCTGACTGTGGTGTTTTGTGCGTTCGCAGGTGATATCAGATTCCCATCCACAGTCATGTGGTGATACGATCTCTCTCTCACACACTCACACACATCATGGCGCATCCGTACGACCCCTGGTTGCGCGCTGGGCCGCCGCAGGACGAGGTGAGCGTGTCCGGCTGGTGGGACGTGCACACTGGAGCCGCGGCTGGCTGGATGGACCTGCAGGGGGCGGGGCTGGGGGCGGGGCCAGGGCAGGGCGGACCCATGAGCTCCTACACAGCCGACCCTCAGATGTGCTGCCTGCCTCCCTCCGGCTCCGCCCACTCCGGCCTGCACTTCCCCCCTGAGGGCTTCAAAATGGAGCCGTTGCCGCAGGATCTGCTGCCGCTCCCGCAGGCCTCGTCGTCCTACTCCTCGGAGGAGCCGCAGGACACAGCGGGGGCTTCTGCACGGCCGAAGTCGCAGCGACGCGCTGGTGGTCGGGCTCCCGGTCAGGCCTCCTGCCGCTGTCCCAACTGTCTGAGCGCCGAGTCCCTGGGAAACAGCAGCGGCAGCAGCGACGGCAAACGCAAACACCTGCACAACTGCCACATCCCCGGCTGCGGGAAAGCCTATGTGAAGACGTCGCACCTCAAAGCGCACCTGCGCTGGCACAGCGGCGACCGGCCTTTCGTCTGCAACTGGCTGTTCTGCGGCAAGCGCTTCACCCGCTCGGACGAGCTGCAGCGCCACCTGCAGACGCACACCGGCGCCAAGCGCTTCGGCTGCAGTTCCTGCCCGCGTGTCTTCCTGCGCGCCGACCACCTGGCCAAACACGTGCGTGTGCACGAGTCGCCCTGCCAACCTGCCGAAGAGACTCACTCGGCGACGGGAAGCAGCACCGGTGCGACGTCACTGCTCAGAGTCAAGACGGAGTCAGAGAACGGCGACGAAGACACGACGAACGCCTAATCGACTCTGATAAACGAGACTCATCATTCTGAAGGCGACTGATATGAACTATATTCACATCTGTAAATGACCTGTAGAAGGTGGCATTGGCATGTAACACGTAACATAATGCTTTTATATCTTTAGTTTTATTTATATTTGTACATTTTGTGTTTCATTCTCTGTTGATTAACTTAAAGATGTTGTGTGTCGTGTGTGAGTGTTTTTGTTGCTGTAATCTCAAGATTTGTAGTGAAGATATGTCATTAGTTTGAATAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09196 SP6; transcription factor Sp6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000365_00326334_00327173.mRNA True 1526 mRNA 0.54 1 326075 327600

Neighbor

gene id symbol gene type direction distance location
CI01000365_00215623_00216039 NA coding downstream 107686 214868 ~ 218389 (-)
CI01000365_00102657_00113817 NA coding downstream 212083 102430 ~ 113992 (-)
CI01000365_00096865_00101128 ZBTB45 coding downstream 223891 96541 ~ 102184 (-)
CI01000365_00040221_00045449 CDC37 coding downstream 280626 39830 ~ 45449 (-)
CI01000365_00436141_00445601 NA coding upstream 107838 435438 ~ 445601 (-)
G520420 NA non-coding downstream 1329 242506 ~ 324746 (-)
G520418 NA non-coding downstream 33175 291733 ~ 292900 (-)
G520491 NA non-coding downstream 34424 273825 ~ 291651 (-)
G520417 NA non-coding downstream 81932 123859 ~ 244143 (-)
G520429 NA non-coding downstream 196044 126197 ~ 130031 (-)
G520565 NA non-coding upstream 66929 394529 ~ 398108 (-)
G520569 NA non-coding upstream 78101 405701 ~ 410085 (-)
G520573 NA non-coding upstream 89149 416749 ~ 418336 (-)
G520557 NA other upstream 48565 376165 ~ 377658 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000900 sp6 coding NC_007112.7 CM002885.2 59533317 ~ 59539898 (+)
tiger barb (Puntius tetrazona) G7683 LOC107739936,LOC107690077,LOC107566820 non-coding NC_056699.1 CM032068.1 29496887 ~ 29500697 (-)