XLOC_000900 (sp6)


Basic Information

Item Value
gene id XLOC_000900
gene name sp6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59533317 ~ 59539898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001411
GACATTCAGCAGGAGATGCGAGCAGGTTCAGGCAGTGACATCAGAGTCCCATCCACAGTCATGTGGTAATACAgtggtgcacacacacacgcacacacacacctgcggcCCCTCAGACTCGCCATGGCCCACCCGTACGACCCCTGGCTGCGTGCCGGCCCTCCGCAGGATGAGGTGAGCGTGTCGGGCTGGTGGGATGTTCACACTGGAGCGCCGGCAGGATGGATGGACTTGCAGGGGGCGGGGCTGGGGGCGGGGCCGGGGCAGAGCGGCTCTATGAGCTCCTATACGGCCGAGCCTCAGATGTGCTGCCTATCCCCGCCTGGCTCCGGCATGCACTTCCCACCCGAGGGTTTCAAGATGGAGCCTCTGCCGCAGGACCTGCTGCCGCTCCCGCAGGCCTCAGCCTCATTCTCCTCGGAGGAGCAGCAGGACGCCGTGGCCGCTGCGGGCCGACCTAAACCACAGCGGCGGGCCAGCAGTCGAGCCCCCGGTCAGGCTTCCTGCCGCTGCCCGAACTGCCTGAGCGCAGAGTCTCTGGGGAACTCCGGGGACGCCAGCAAACGCAAACACCTGCACAACTGCCACATCCCCGGCTGCGGGAAAGCCTACGTCAAGACGTCACACCTGAAGGCACACCTGCGCTGGCACAGCGGCGACAGGCCCTTCGTCTGCAACTGGCTGTTCTGTGGCAAACGCTTCACTCGCTCGGATGAGCTGCAGCGCCACCTGCAGACACACACCGGCGCTAAACGCTTCGGCTGCAGCTCGTGCCCGCGGGTGTTCCTGCGCGCCGATCACCTGGCCAAACACATGCGCGTGCACGAGTCCCCGAGCCAATCCACTGAAGAGACTCACGCCGCCGCCGCGGGAACCAGCACAGGAACCAGCAGCGCACTGCTGCGAGTGAAGACAGAGACCGACAACGGAGACGACGACGCCACGCTAGCTAACAGCTAATCACTCAGCAGATGAACAAGACTCAGAGGCTGAGCGTCTGGAAGCGCATGACAATACAACACATCACACACCCTTCACATCTGTAGTGTTATTTATACCTGTACATGTCCATATTCTCTGATTAACTTAACATGTTCTGTTCCCTCAATGTAAACTGCAGACTTGTATAACGTTTGAGTAAATATAAACCATTTGTTGTTCATTTGTCT
>TCONS_00001412
GTTCAGGCAGTGACATCAGAGTCCCATCCACAGTCATGTGGTAATACAgtggtgcacacacacacgcacacacacacctgcggcCCCTCAGACTCGCCATGGCCCACCCGTACGACCCCTGGCTGCGTGCCGGCCCTCCGCAGGATGAGGTGAGCGTGTCGGGCTGGTGGGATGTTCACACTGGAGCGCCGGCAGGATGGATGGACTTGCAGGGGGCGGGGCTGGGGGCGGGGCCGGGGCAGAGCGGCTCTATGAGCTCCTATACGGCCGAGCCTCAGATGTGCTGCCTATCCCCGCCTGGCTCCGGCATGCACTTCCCACCCGAGGGTTTCAAGATGGAGCCTCTGCCGCAGGACCTGCTGCCGCTCCCGCAGGCCTCAGCCTCATTCTCCTCGGAGGAGCAGCAGGACGCCGTGGCCGCTGCGGGCCGACCTAAACCACAGCGGCGGGCCAGCAGTCGAGCCCCCGGTCAGGCTTCCTGCCGCTGCCCGAACTGCCTGAGCGCAGAGTCTCTGGGGAACTCCGGGGACGCCAGCAAACGCAAACACCTGCACAACTGCCACATCCCCGGCTGCGGGAAAGCCTACGTCAAGACGTCACACCTGAAGGCACACCTGCGCTGGCACAGCGGCGACAGGCCCTTCGTCTGCAACTGGCTGTTCTGTGGCAAACGCTTCACTCGCTCGGATGAGCTGCAGCGCCACCTGCAGACACACACCGGCGCTAAACGCTTCGGCTGCAGCTCGTGCCCGCGGGTGTTCCTGCGCGCCGATCACCTGGCCAAACACATGCGCGTGCACGAGTCCCCGAGCCAATCCACTGAAGAGACTCACGCCGCCGCCGCGGGAACCAGCACAGGAACCAGCAGCGCACTGCTGCGAGTGAAGACAGAGACCGACAACGGAGACGACGACGCCACGCTAGCTAACAGCTAATCACTCAGCAGATGAACAAGACTCAGAGGCTGAGCGTCTGGAAGCGCATGACAATACAACACATCACACACCCTTCACATCTGTAGTGTTATTTATACCTGTACATGTCCATATTCTCTGATTAACTTAACATGTTCTGTTCCCTCAATGTAAACTGCAGACTTGTATAACGTTTGAGTAAATATAAACCATTTGTTGTTCATTTGTCT

Function

symbol description
sp6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human SP6 (Sp6 transcription factor).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-1824 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human SP6 (Sp6 transcription factor).

Ensembl:

ensembl_id ENSDARG00000099880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001411 False 1169 mRNA 0.60 2 59533317 59539898
TCONS_00001412 True 1144 mRNA 0.61 1 59538755 59539898

Neighbor

gene id symbol gene type direction distance location
XLOC_000899 FP236157.1 coding upstream 10746 59520300 ~ 59522571 (+)
XLOC_000898 CABZ01052576.1 coding upstream 197377 59328030 ~ 59335940 (+)
XLOC_000897 parn coding upstream 208778 59314675 ~ 59324539 (+)
XLOC_000896 NA coding upstream 219789 59312530 ~ 59313528 (+)
XLOC_000895 rdh8b coding upstream 229857 59293873 ~ 59303460 (+)
XLOC_000901 NA coding downstream 5731 59545629 ~ 59547121 (+)
XLOC_000894 NA non-coding upstream 281638 59248130 ~ 59251679 (+)
XLOC_000893 NA non-coding upstream 370486 59161965 ~ 59162831 (+)
XLOC_000889 NA non-coding upstream 394723 59137883 ~ 59138594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000365_00326334_00327173 NA coding CI01000365 null 326075 ~ 327600 (-)
tiger barb (Puntius tetrazona) G7683 LOC107739936,LOC107690077,LOC107566820 non-coding NC_056699.1 CM032068.1 29496887 ~ 29500697 (-)