XLOC_000896


Basic Information

Item Value
gene id XLOC_000896
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59312530 ~ 59313528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003280
GCATGTCAGACACGAGAGAATTTAGACATTGTTTTGGAGAATCTACATTATAGAAATCAATGCTGAGACTCACATCTACATCATGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCAGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGTGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGGGCAGCAGGAGCGCGCAGGTCAGCAGTACGGCACCGCAGCACAGTATCTTTACGGGTCTTCTCGCCATCTGATTCACCGCCTGCCGGAGCTCAGCCCGAACCCGCCGCAGCATCACCGACCGCTACAGACAGCAGCTCATCCCGGTGAACCGAACACAGCTGAACAGGAGCGGTGGAACTGAGCACCAACCGCTTAAACACACGTCACACTTCC
>TCONS_00003281
atatgatataatattgaTATTCATCAGTGTATTTACCCGCAGGTGTGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCAGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGTGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGGGCAGCAGGAGCGCGCAGGTCAGCAGTACGGCACCGCAGCACAGTATCTTTACGGGTCTTCTCGCCATCTGATTCACCGCCTGCCGGAGCTCAGCCCGAACCCGCCGCAGCATCACCGACCGCTACAGACAGCAGCTCATCCCGGTGAACCGAACACAGCTGAACAGGAGCGGTGGAACTGAGCACCAACCGCTTAAACACACGTCACACTTCC
>TCONS_00003282
CATCAGTGTATTTACCCGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGTGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGGGCAGCAGGAGCGCGCAGGTCAGCAGTACGGCACCGCAGCACAGTATCTTTACGGGTCTTCTCGCCATCTGATTCACCGCCTGCCGGAGCTCAGCCCGAACCCGCCGCAGCATCACCGACCGCTACAGACAGCAGCTCATCCCGGTGAACCGAACACAGCTGAACAGGAGCGGTGGAACTGAGCACCAACCGCTTAAACACACGTCACACTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003280 False 558 lncRNA 0.44 3 59312530 59313528
TCONS_00003281 False 520 lncRNA 0.44 3 59312694 59313528
TCONS_00003282 True 373 lncRNA 0.50 2 59312967 59313528

Neighbor

gene id symbol gene type direction distance location
XLOC_000895 rdh8b coding upstream 9070 59293873 ~ 59303460 (+)
XLOC_000894 NA coding upstream 60851 59248130 ~ 59251679 (+)
XLOC_000893 NA coding upstream 149699 59161965 ~ 59162831 (+)
XLOC_000892 soul5l coding upstream 154453 59154521 ~ 59158077 (+)
XLOC_000891 gpr108 coding upstream 161472 59146298 ~ 59151058 (+)
XLOC_000897 parn coding downstream 1147 59314675 ~ 59324539 (+)
XLOC_000898 CABZ01052576.1 coding downstream 14502 59328030 ~ 59335940 (+)
XLOC_000899 FP236157.1 coding downstream 206772 59520300 ~ 59522571 (+)
XLOC_000900 sp6 coding downstream 219789 59533317 ~ 59539898 (+)
XLOC_000901 NA coding downstream 232101 59545629 ~ 59547121 (+)
XLOC_000889 NA non-coding upstream 173936 59137883 ~ 59138594 (+)
XLOC_000888 FP015850.1 non-coding upstream 181124 59131292 ~ 59131406 (+)
XLOC_000879 NA non-coding upstream 335843 58975017 ~ 58976687 (+)

Expression


Co-expression Network