RNA id: TCONS_00003280


Basic Information

Item Value
RNA id TCONS_00003280
length 558
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id XLOC_000896
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59312530 ~ 59313528 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATGTCAGACACGAGAGAATTTAGACATTGTTTTGGAGAATCTACATTATAGAAATCAATGCTGAGACTCACATCTACATCATGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCAGCAGGTGAGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGTGTGTTATGATCAGCAGTATATGATATAATATTGATATTCATCAGTGTATTTACCCGCAGGTGAGTGTTATGGGCAGCAGGAGCGCGCAGGTCAGCAGTACGGCACCGCAGCACAGTATCTTTACGGGTCTTCTCGCCATCTGATTCACCGCCTGCCGGAGCTCAGCCCGAACCCGCCGCAGCATCACCGACCGCTACAGACAGCAGCTCATCCCGGTGAACCGAACACAGCTGAACAGGAGCGGTGGAACTGAGCACCAACCGCTTAAACACACGTCACACTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003279 lncRNA upstream 60851 59248130 ~ 59251679 (+) True XLOC_000894
TCONS_00003278 lncRNA upstream 149699 59161965 ~ 59162831 (+) True XLOC_000893
TCONS_00001398 lncRNA upstream 162009 59147385 ~ 59150521 (+) False XLOC_000891
TCONS_00001399 lncRNA upstream 162009 59148742 ~ 59150521 (+) True XLOC_000891
TCONS_00003277 lncRNA upstream 173936 59137883 ~ 59138594 (+) True XLOC_000889
TCONS_00001405 lncRNA downstream 1193 59314721 ~ 59319233 (+) False XLOC_000897
TCONS_00001410 lncRNA downstream 206772 59520300 ~ 59522571 (+) True XLOC_000899
TCONS_00002893 lncRNA downstream 232101 59545629 ~ 59547121 (+) True XLOC_000901
TCONS_00001402 mRNA upstream 9070 59293873 ~ 59303460 (+) True XLOC_000895
TCONS_00001400 mRNA upstream 154453 59154521 ~ 59158077 (+) False XLOC_000892
TCONS_00001401 mRNA upstream 154617 59154576 ~ 59157913 (+) True XLOC_000892
TCONS_00001397 mRNA upstream 161472 59146409 ~ 59151058 (+) False XLOC_000891
TCONS_00001396 mRNA upstream 162569 59146298 ~ 59149961 (+) False XLOC_000891
TCONS_00001404 mRNA downstream 1147 59314675 ~ 59324539 (+) False XLOC_000897
TCONS_00001403 mRNA downstream 1147 59314675 ~ 59324539 (+) False XLOC_000897
TCONS_00001406 mRNA downstream 1207 59314735 ~ 59324523 (+) False XLOC_000897
TCONS_00001407 mRNA downstream 1217 59314745 ~ 59320002 (+) False XLOC_000897
TCONS_00001408 mRNA downstream 8101 59321629 ~ 59324448 (+) True XLOC_000897
TCONS_00001394 other upstream 181124 59131292 ~ 59131406 (+) True XLOC_000888
TCONS_00001335 other upstream 1138941 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1957497 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 4015279 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 4183951 55128465 ~ 55128579 (+) True XLOC_000733