Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001405 |
| length | 770 |
| lncRNA type | retained_intron |
| GC content | 0.52 |
| exon number | 8 |
| gene id | XLOC_000897 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 59314675 ~ 59324539 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0006402 | mRNA catabolic process | biological_process |
| GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004527 | exonuclease activity | molecular_function |
| GO:0004535 | poly(A)-specific ribonuclease activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0000175 | 3'-5'-exoribonuclease activity | molecular_function |
| GO:0043169 | cation binding | molecular_function |
| id | description |
|---|---|
| ko00524 | Neomycin, kanamycin and gentamicin biosynthesis |
| ko03018 | RNA degradation |
| ko03019 | Messenger RNA biogenesis |
| id | description |
|---|---|
| ZDB-GENE-040426-880 | Predicted to enable RNA binding activity; cation binding activity; and poly(A)-specific ribonuclease activity. Acts upstream of or within hemopoiesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease). |
| ensembl_id | ENSDART00000167095 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003280 | lncRNA | upstream | 1193 | 59312530 ~ 59313528 (+) | False | XLOC_000896 |
| TCONS_00003281 | lncRNA | upstream | 1193 | 59312694 ~ 59313528 (+) | False | XLOC_000896 |
| TCONS_00003282 | lncRNA | upstream | 1193 | 59312967 ~ 59313528 (+) | True | XLOC_000896 |
| TCONS_00003279 | lncRNA | upstream | 63042 | 59248130 ~ 59251679 (+) | True | XLOC_000894 |
| TCONS_00003278 | lncRNA | upstream | 151890 | 59161965 ~ 59162831 (+) | True | XLOC_000893 |
| TCONS_00001410 | lncRNA | downstream | 201067 | 59520300 ~ 59522571 (+) | True | XLOC_000899 |
| TCONS_00002893 | lncRNA | downstream | 226396 | 59545629 ~ 59547121 (+) | True | XLOC_000901 |
| TCONS_00001402 | mRNA | upstream | 11261 | 59293873 ~ 59303460 (+) | True | XLOC_000895 |
| TCONS_00001400 | mRNA | upstream | 156644 | 59154521 ~ 59158077 (+) | False | XLOC_000892 |
| TCONS_00001401 | mRNA | upstream | 156808 | 59154576 ~ 59157913 (+) | True | XLOC_000892 |
| TCONS_00001397 | mRNA | upstream | 163663 | 59146409 ~ 59151058 (+) | False | XLOC_000891 |
| TCONS_00001396 | mRNA | upstream | 164760 | 59146298 ~ 59149961 (+) | False | XLOC_000891 |
| TCONS_00001408 | mRNA | downstream | 2396 | 59321629 ~ 59324448 (+) | True | XLOC_000897 |
| TCONS_00001409 | mRNA | downstream | 8797 | 59328030 ~ 59335940 (+) | True | XLOC_000898 |
| TCONS_00001411 | mRNA | downstream | 214084 | 59533317 ~ 59539898 (+) | False | XLOC_000900 |
| TCONS_00001412 | mRNA | downstream | 219522 | 59538755 ~ 59539898 (+) | True | XLOC_000900 |
| TCONS_00001394 | other | upstream | 183315 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
| TCONS_00001335 | other | upstream | 1141132 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001304 | other | upstream | 1959688 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001233 | other | upstream | 4017470 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001221 | other | upstream | 4186142 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
