XLOC_000897 (parn)


Basic Information

Item Value
gene id XLOC_000897
gene name parn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59314675 ~ 59324539 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001404
GTGCGTGCGAGCGTTTCCGGCGGCCGGGGTTAAAGcttccagtgtgtgtgtttgtgtgtatcgcAGCTTTGGAGGATGGAGGTCACGAGACAGAATTTTAAGGAGATTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCTATCGACGGAGAgttcacaggaaTCAGTGATGGGCCGTCTGTCAGTGCTCTGACCAATGGACTGGACACTCCAGAGGAGAGATACACCAAACTGAGGAAgCACTCCATGAACTTCCTGCTGTTCCAGTTCGGCGTCTGCACCTTCAGATACGACCAGAACCAGTCGACgtaCATCACTAAAGCCTTCAACTTCTACATCTTCCCCAAACCCTTCAGCCGCACGTCTCCAGATATAAAGTTCATCTGTCAGAGCTCCAGTATTGACTTTCTGGCCAGTCAGGGCTTCGACTTCAACAAGGTCTTCCGCAGCGGGATCCCATACCTAACTCAGGAGGAGGAGTGTCAGCTGAGGGAGCAGTATGAGGAGAGGCGGGGTCAGATGAATGGGGCGGGCCCAGTCTCATACACGCCCCCTTCAGGCACTGGTGTGTGTAACGTGCCAGAGGACCAGAGAGAGTTCATCAGGAGTGTGGAggaaAAGGTTGAAGCTCTACTAAAGAACACTGATCAGACCCTGGATCTGGAGCCCTGCACCGGGTTTCAGAGGAAGCTCATCTATCAGACACTCAACTcaaaGTATTCTAAAGGTCTTCATGTGGAGACGCTGGAGACTGAGAAgAAGGAGCGTTTCATCCAGATCAGTAAAGTGGATGATgaggagaggaggaggagagagCAGCAGAAACAGCAGAGagagcaggaggagctgAATGATGCTGTGGGTTTCTCCAGGGTTATCAGAGCCATCTCCAAATCTGGTAAGCTGGTGGTGGGCCACAACATGCTGCTGGACGTCATGCACACCATACACCAGTTCTGCGGGCCGCTGCCGGAGgaGCTGGATGACTTCAAGGAGGTGGCCATGACTGTGTTTCCCAGgctgCTAGACACCAAGCTGATGGCGTCCACACAACCGTTCAAGGAGATCATCCACAACACCTCACTGGCTGAACTACACAAACAGCTGAGACAGAAACCCTTCAGACCACCCACCactgagtgtCCTGAAGGCCTCCAGAGTTACGACACCTCCACCGAGCAGCTTCATGAAGCTGGATATGACGCCTTCATCACCGGACTCTGCTTCATCTCCATGGCCAACTAcctggGCTCTTTCCTCACGCCGCCCAAGAGCCACATCTCTGCCCGCTCCAAACTGCTGGAGCCCTTCTACAACAaATTATTCCTGATGAGGGTCATCGACATTCCCTACCTGAACATGAGCGGACCTGACttgcagCCCAAGAGAGATCATGTCCTGTACGTCACGTTCCCTAAAGAGTGGAAGACCAGTGACCTGTACCAGCTGTTCAGCGCCTTCGggaACATCCAGGTGTCGTGGGTGGACGACACGTCAGCGTTCGTGTCTCTCAGTCAGACAGAGCAGGTTCAGATCGccatGAACACCAGCCGATACGCTGAGAGCTACCGCATCCAGACCTATGCGGAGTACCTGCAGTCCCGGCAGAAGAACACACACTCCAGCAGGAAGTGGGCCAGCGATGGGTGGGCGGATACTTCCTACCCCAGTGTCGCCATGACAACCGCATCCGGCTACAGCCACACCGACAACCGgcatcAGGCGGTCAAGCGCAGCATCAGTCCGTCTCTGGATGAGCAGAATCACGGCGCCGACAGCAGCTGGACGAACTACAGCGTCAAGAAGATCAAGACTGAGGGAAGCTGCACGCAGACCTACGCTGACGTCGCCGGCTCCTGTGATTGGCCTAGACTGCAGGCTGATGAAGGCGGAGCCTCTGTGAGCCCAGTGGCAGAGGAGGCGGAGCTCGATGAgttctcagccaatcagagtcaaggTAAAAGGAGCCGCAAGCACAAGAAGAGGAAGTCAGACGCTTCTGAAACTACACCGCCAGCGCTCTTTGACGTCCCTCAGGTTTGGTAGCCCGCAGAAGCCAATCAGAACCCCCGCTCAGTCCGAGTGTaatcaacagccaatcagaagaaAGCACTTAACTCCTGACGCCCAGCGTGTGACTTCCTGTGACCTCTCCTCACGAAAACAGAGCATTTTAAAGGTGCTGGAGTTACTGAGccatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacttgtaTTTTAAGACTGTTTCCGCAAGCGTTCCCTCTTTTTAACCGTGCTGAGTGTCCTGCAGGTCTATTTATTCCTCGCGAGGGACTATTATTGTGTTTGAGTTCCTTCAGATtaatgttgagaaaaaaaaaaaagaatcgtgTCAAAGAATGTCTGCTCATCACTGCGAATGTCGTTCATGTGTTTTGTATAATATGTTCAAATGTTCCCTTTTCCGGGGAGATGAAATTAAAGAGTCTTTCTTAGTA
>TCONS_00001403
GTGCGTGCGAGCGTTTCCGGCGGCCGGGGTTAAAGcttccagtgtgtgtgtttgtgtgtatcgcAGCTTTGGAGGATGGAGGTCACGAGACAGAATTTTAAGGAGATTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCTATCGACGGAGAgttcacaggaaTCAGTGATGGGCCGTCTGTCAGTGCTCTGACCAATGGACTGGACACTCCAGAGGAGAGATACACCAAACTGAGGAAgCACTCCATGAACTTCCTGCTGTTCCAGTTCGGCGTCTGCACCTTCAGATACGACCAGAACCAGTCGACgtaCATCACTAAAGCCTTCAACTTCTACATCTTCCCCAAACCCTTCAGCCGCACGTCTCCAGATATAAAGTTCATCTGTCAGAGCTCCAGTATTGACTTTCTGGCCAGTCAGGGCTTCGACTTCAACAAGGTCTTCCGCAGCGGGATCCCATACCTAACTCAGGAGGAGGAGTGTCAGCTGAGGGAGCAGTATGAGGAGAGGCGGGGTCAGATGAATGGGGCGGGCCCAGTCTCATACACGCCCCCTTCAGGCACTGGTGTGTGTAACGTGCCAGAGGACCAGAGAGAGTTCATCAGGAGTGTGGAggaaAAGGTTGAAGCTCTACTAAAGAACACTGATCAGACCCTGGATCTGGAGCCCTGCACCGGGTTTCAGAGGAAGCTCATCTATCAGACACTCAACTcaaaGTATTCTAAAGGTCTTCATGTGGAGACGCTGGAGACTGAGAAgAAGGAGCGTTTCATCCAGATCAGTAAAGTGGATGATgaggagaggaggaggagagagCAGCAGAAACAGCAGAGagagcaggaggagctgAATGATGCTGTGGGTTTCTCCAGGGTTATCAGAGCCATCTCCAAATCTGGTAAGCTGGTGGTGGGCCACAACATGCTGCTGGACGTCATGCACACCATACACCAGTTCTGCGGGCCGCTGCCGGAGgaGCTGGATGACTTCAAGGAGGTGGCCATGACTGTGTTTCCCAGgctgCTAGACACCAAGCTGATGGCGTCCACACAACCGTTCAAGGAGATCATCCACAACACCTCACTGGCTGAACTACACAAACAGCTGAGACAGAAACCCTTCAGACCACCCACCactgagtgtCCTGAAGGCCTCCAGAGTTACGACACCTCCACCGAGCAGCTTCATGAAGCTGGATATGACGCCTTCATCACCGGACTCTGCTTCATCTCCATGGCCAACTAcctggGCTCTTTCCTCACGCCGCCCAAGAGCCACATCTCTGCCCGCTCCAAACTGCTGGAGCCCTTCTACAACAaATTATTCCTGATGAGGGTCATCGACATTCCCTACCTGAACATGAGCGGACCTGACttgcagCCCAAGAGAGATCATGTCCTGTACGTCACGTTCCCTAAAGAGTGGAAGACCAGTGACCTGTACCAGCTGTTCAGCGCCTTCGggaACATCCAGGTGTCGTGGGTGGACGACACGTCAGCGTTCGTGTCTCTCAGTCAGACAGAGCAGGTTCAGATCGccatGAACACCAGCCGATACGCTGAGAGCTACCGCATCCAGACCTATGCGGAGTACCTGCAGTCCCGGCAGAAGAACACACACTCCAGCAGGAAGTGGGCCAGCGATGGGTGGGCGGATACTTCCTACCCCAGTGTCGCCATGACAACCGCATCCGGCTACAGCCACACCGACAACCGgcatcAGGCGGTCAAGCGCAGCATCAGTCCGTCTCTGGATGAGCAGAATCACGGCGCCGACAGCAGCTGGACGAACTACAGCGTCAAGAAGATCAAGACTGAGGGAAGCTGCACGCAGACCTACGCTGACGTCGCCGGCTCCTGTGATTGGCCTAGACTGCAGGCTGATGAAGGCGGAGCCTCTGTGAGCCCAGTGGCAGAGGAGGCGGAGCTCGATGAgttctcagccaatcagagtcaagCTTCTGAAACTACACCGCCAGCGCTCTTTGACGTCCCTCAGGTTTGGTAGCCCGCAGAAGCCAATCAGAACCCCCGCTCAGTCCGAGTGTaatcaacagccaatcagaagaaAGCACTTAACTCCTGACGCCCAGCGTGTGACTTCCTGTGACCTCTCCTCACGAAAACAGAGCATTTTAAAGGTGCTGGAGTTACTGAGccatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacttgtaTTTTAAGACTGTTTCCGCAAGCGTTCCCTCTTTTTAACCGTGCTGAGTGTCCTGCAGGTCTATTTATTCCTCGCGAGGGACTATTATTGTGTTTGAGTTCCTTCAGATtaatgttgagaaaaaaaaaaaagaatcgtgTCAAAGAATGTCTGCTCATCACTGCGAATGTCGTTCATGTGTTTTGTATAATATGTTCAAATGTTCCCTTTTCCGGGGAGATGAAATTAAAGAGTCTTTCTTAGTA
>TCONS_00001405
tgtgtttgtgtgtatcgcAGCTTTGGAGGATGGAGGTCACGAGACAGAATTTTAAGGAGATTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCTATCGACGGAGAgttcacaggaaTCAGTGATGGGCCGTCTGTCAGTGCTCTGACCAATGGACTGGACACTCCAGAGGAGAGATACACCAAACTGAGGAAgCACTCCATGAACTTCCTGCTGTTCCAGTTCGGCGTCTGCACCTTCAGATACGACCAGAACCAGTCGACgtaCATCACTAAAGCCTTCAACTTCTACATCTTCCCCAAACCCTTCAGCCGCACGTCTCCAGATATAAAGTTCATCTGTCAGAGCTCCAGTATTGACTTTCTGGCCAGTCAGGGCTTCGACTTCAACAAGGTCTTCCGCAGCGGTCAGTGCGCACTCTCTCTCTTCCCCTCACGTGATTGGTTGctggtgtctctgtgtgtgtttgattgacagctgtggtTGCCGTAGGGATCCCATACCTAACTCAGGAGGAGGAGTGTCAGCTGAGGGAGCAGTATGAGGAGAGGCGGGGTCAGATGAATGGGGCGGGCCCAGTCTCATACACGCCCCCTTCAGGCACTGGTGTGTGTAACGTGCCAGAGGACCAGAGAGAGTTCATCAGGAGTGTGGAggaaAAGGTTGAAGCTCTACTAAAGAACACTGATCAGACCCTGGATCTGGAGCCCTGCACCGGGTTTCAGAGGAAGCTCATCTATCAGACACTCAACTcaaagt
>TCONS_00001406
tcgcAGCTTTGGAGGATGGAGGTCACGAGACAGAATTTTAAGGAGATTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCTATCGACGGAGAgttcacaggaaTCAGTGATGGGCCGTCTGTCAGTGCTCTGACCAATGGACTGGACACTCCAGAGGAGAGATACACCAAACTGAGGAAgCACTCCATGAACTTCCTGCTGTTCCAGTTCGGTGCTGGAGTTACTGAGccatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacttgtaTTTTAAGACTGTTTCCGCAAGCGTTCCCTCTTTTTAACCGTGCTGAGTGTCCTGCAGGTCTATTTATTCCTCGCGAGGGACTATTATTGTGTTTGAGTTCCTTCAGATtaatgttgagaaaaaaaaaaaagaatcgtgTCAAAGAATGTCTGCTCATCACTGCGAATGTCGTTCATGTGTTTTGTATAATATGTTCAAATGTTCCCTTTTCCGGGGAGATGAAATTAA
>TCONS_00001407
GGAGGATGGAGGTCACGAGACAGAATTTTAAGGAGATTCTTCCAGAGGTGTGTAACGCGGTGCAGGAGGCGGATTTCATCTCTATCGACGGAGAgttcacaggaaTCAGTGATGGGCCGTCTGTCAGTGCTCTGACCAATGGACTGGACACTCCAGAGGAGAGATACACCAAACTGAGGAAgCACTCCATGAACTTCCTGCTGTTCCAGTTCGGCGTCTGCACCTTCAGATACGACCAGAACCAGTCGACgtaCATCACTAAAGCCTTCAACTTCTACATCTTCCCCAAACCCTTCAGCCGCACGTCTCCAGATATAAAGTTCATCTGTCAGACACTCAACTcaaaGTATTCTAAAGGTCTTCATGTGGAGACGCTGGAGACTGAGAAgAAGGAGCGTTTCATCCAGATCAGTAAAGTGGATGATgaggagaggaggaggagagagCAGCAGAAACAGCAGAGagagcagGGTAAGCTGGTGGTGGGCCACAACATGCTGCTGGACGTCATGCACACCATACACCAGTTCTGCGGGCCGCTGCCGGAGgaGCTGGATGACTTCAAGGAGGTGGCCATGACTGTGT
>TCONS_00001408
CAAGCGCAGCATCAGTCCGTCTCTGGATGAGCAGAATCACGGCGCCGACAGCAGCTGGACGAACTACAGCGTCAAGAAGATCAAGACTGAGGGAAGCTGCACGCAGACCTACGCTGACGTCGCCGGCTCCTGTGATTGGCCTAGACTGCAGGCTGATGAAGGCGGAGCCTCTGTGAGCCCAGTGGCAGAGGAGGCGGAGCTCGATGAgttctcagccaatcagagtcaaggTAAAAGGAGCCGCAAGCACAAGAAGAGGAAGTCAGACGGTGAGCGTTTATATTAGCATGCGCAGATTAGCCGGTAGCCTGCTGAACACCTGCGTTTGTTTTGTTGCACAGCTTCTGAAACTACACCGCCAGCGCTCTTTGACGTCCCTCAGGTTTGGTAGCCCGCAGAAGCCAATCAGAACCCCCGCTCAGTCCGAGTGTaatcaacagccaatcagaagaaAGCACTTAACTCCTGACGCCCAGCGTGTGACTTCCTGTGACCTCTCCTCACGAAAACAGAGCATTTTAAAGGTGCTGGAGTTACTGAGccatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacttgtaTTTTAAGACTGTTTCCGCAAGCGTTCCCTCTTTTTAACCGTGCTGAGTGTCCTGCAGGTCTATTTATTCCTCGCGAGGGACTATTATTGTGTTTGAGTTCCTTCAGATtaatgttgagaaaaaaaaaaaagaatcgtgTCAAAGAATGTCTGC

Function

symbol description
parn Predicted to enable RNA binding activity; cation binding activity; and poly(A)-specific ribonuclease activity. Acts upstream of or within hemopoiesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0000175 3'-5'-exoribonuclease activity molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko00524 Neomycin, kanamycin and gentamicin biosynthesis
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-880 Predicted to enable RNA binding activity; cation binding activity; and poly(A)-specific ribonuclease activity. Acts upstream of or within hemopoiesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease).

Ensembl:

ensembl_id ENSDARG00000102634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001404 False 2509 mRNA 0.53 26 59314675 59324539
TCONS_00001403 False 2470 mRNA 0.53 26 59314675 59324539
TCONS_00001405 False 770 lncRNA 0.52 8 59314721 59319233
TCONS_00001406 False 525 mRNA 0.45 5 59314735 59324523
TCONS_00001407 False 585 mRNA 0.52 10 59314745 59320002
TCONS_00001408 True 751 mRNA 0.51 3 59321629 59324448

Neighbor

gene id symbol gene type direction distance location
XLOC_000896 NA coding upstream 1147 59312530 ~ 59313528 (+)
XLOC_000895 rdh8b coding upstream 11215 59293873 ~ 59303460 (+)
XLOC_000894 NA coding upstream 62996 59248130 ~ 59251679 (+)
XLOC_000893 NA coding upstream 151844 59161965 ~ 59162831 (+)
XLOC_000892 soul5l coding upstream 156598 59154521 ~ 59158077 (+)
XLOC_000898 CABZ01052576.1 coding downstream 3491 59328030 ~ 59335940 (+)
XLOC_000899 FP236157.1 coding downstream 195761 59520300 ~ 59522571 (+)
XLOC_000900 sp6 coding downstream 208778 59533317 ~ 59539898 (+)
XLOC_000901 NA coding downstream 221090 59545629 ~ 59547121 (+)
XLOC_000889 NA non-coding upstream 176081 59137883 ~ 59138594 (+)
XLOC_000888 FP015850.1 non-coding upstream 183269 59131292 ~ 59131406 (+)

Expression


Co-expression Network