XLOC_000895 (rdh8b)


Basic Information

Item Value
gene id XLOC_000895
gene name rdh8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59293873 ~ 59303460 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001402
CGCGTGCCGTGTCCTCCTGCGCGCTCCCGCCTGCTGATTGAGGCTCCGGTTCTCCGGTCAGTTCTCCGGTTCGGCGATGGCGAGCGCGGGGCAAAAAGTAGTGCTGATCACCGGCTGCTCCTCCGGCATCGGGCTCGGGATCGCCGTGATGCTCGCCAGAGACAAGCAGCAGCGCTATTACGtcatTGCTACGATGCGTGACCTGAAGCGTCAGGATAAGCTGGTGTGTGCTGCGGGAGACACTTACGGGAAAACACTGACGGTGTGCACACTGGACGTCTGCAGCAACGAGTCCGTCAGACAGTGTGTTGACAGCGTCAAAGACCGACATATAGACATTCTGAtcaatAACGCTGGCGTGGGTCTGGTGGGCCCGGTGGAGGGTCTCAGTCTGGATGATATGATGAAGGTGTTCGAGACTAACTTCTTCGGTGCGGTGCGCATGATTAAAGAGGTGATGCCGGACATGAAGAAGCGGCGCTCAGGACATATCATCGTCATCAGCAGCGTGATGGGCCTGCAggGTGTGGCCTTTAATGACGTTTACGCCGCGTCGAAGTTCGCCATCGAGGGCTTCTGTGAGAGTCTGGCCGTGCAGCTTCTCAAGTTCAACGTCACCATGTCGATGATCGAGCCCGGGCCTGTACACACTGAGTTTGAGATGAAGATGTATGATGACGTCTCCAAGAAGGAGTATCCCAACACTGACCCAGAGACGATGCACCACTTCAGGACCTGCTATCTGCCCACCTCAGTCAACATTTTCCAGGGCCTGGGACAAACGCCAGAGGACATCGCCAAGGTCACGAAGAAGGTGATCGAGTCTCCGCGTCCGCCGTTCCGCAGCCTGACCAACCCTCTGTACACACCCATCGTGGCGCTGAAGTACGCAGACGACTCCGGCGACCTGTCCTTACACACCTTCTACCACATGCTGTACAACCTGGGCGGAGTCATGCACGTCAGCGTGAGGATCATGAAGGTGCTGAGCTTCAGCTGTATGAGGAGACGAGCCGTATCCCctgactaacacacacacacacactcacctgtgGATGCTGGAGGAGAGAGCTGTATCACccgactaacacacacacacacacacatctgtggaTGCTGGAGGGTACGAGCCGTATCCCctgactaacacacacacacaaacacacacacccactcacacacacacctgaggatGCTGGAGGAGGTGAGCTGTATCCCCTGACTAACAGACACAGTTTCATATAGTATATGAAGCACTATATTAGTGTATATTTTAAGCAGATGAGACTTAGGACCAGATGATTtataaagtctgtgtgaaatctaaATTCACAATATATATTTGCTAGAGCatattagctgtgtttccatccaaagatgtgaattagacATTATTAAACTGAAATATCTGCTCATCATCAGTGATAAATCAGCATCTCCCTGAGTGCTGCACAGTAGAGCATCATCTCCTCAGCTGACTGAATTCAGTAAACGTGTTCTCATTGTCGTTTATACACATTTTCTATTGGATAAACGTTGATGCTACTCTGTTGTGTGCATAATCTTTTTTGAATGTGCATTTTGGCGTTTCCAGcaagcatttttaatgcacatatccaaaatgagcataaacatGAGAGGATGGAAACAGCTGATGTTGTTCTGCAGGTTAACGATGAGCACAAGTGAATCCACTGAAACTGAAATGTTCGCTTTGGTTATCTTCAACCTGAGCATCTGCTTGGATTTGCTTTGTGACGTCAGCTTGACTACAGAAAAAATATTCGTAGCCACGCCCCCTTACCACTAGTTTACTACGACTCCGCCCCCAACTCAATAACATTCCATTTGGAAATATGTCAGCATAATGAAGCAAACATCTCAGCAACTCCTGATTCACTTTAAAGTCAAACTCATGTTCCTGTCATATAAAGCTGTTGATAAGCTCAGTGAGACTTCATAAAGCTGAGGAAGACTGTCTAGTGAAGCAGCAGTAGATCCTGAAGAACAGCGTGATAAACAGCTGATCTGTAGAACTGTCAATACATCAAATCAACATGAAGACAAATAAAGACGACTTGGCTTGAA

Function

symbol description
rdh8b Predicted to enable NADP-retinol dehydrogenase activity and estradiol 17-beta-dehydrogenase activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytoplasm and membrane. Is expressed in brain; eye; fin; retina; and retinal photoreceptor layer. Orthologous to human RDH8 (retinol dehydrogenase 8).

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1759 Predicted to enable NADP-retinol dehydrogenase activity and estradiol 17-beta-dehydrogenase activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytoplasm and membrane. Is expressed in brain; eye; fin; retina; and retinal photoreceptor layer. Orthologous to human RDH8 (retinol dehydrogenase 8).

Ensembl:

ensembl_id ENSDARG00000105060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001402 True 2088 mRNA 0.49 6 59293873 59303460

Neighbor

gene id symbol gene type direction distance location
XLOC_000894 NA coding upstream 42194 59248130 ~ 59251679 (+)
XLOC_000893 NA coding upstream 131042 59161965 ~ 59162831 (+)
XLOC_000892 soul5l coding upstream 135796 59154521 ~ 59158077 (+)
XLOC_000891 gpr108 coding upstream 142815 59146298 ~ 59151058 (+)
XLOC_000890 gpr108 coding upstream 147857 59142783 ~ 59146016 (+)
XLOC_000896 NA coding downstream 9070 59312530 ~ 59313528 (+)
XLOC_000897 parn coding downstream 11215 59314675 ~ 59324539 (+)
XLOC_000898 CABZ01052576.1 coding downstream 24570 59328030 ~ 59335940 (+)
XLOC_000899 FP236157.1 coding downstream 216840 59520300 ~ 59522571 (+)
XLOC_000900 sp6 coding downstream 229857 59533317 ~ 59539898 (+)
XLOC_000889 NA non-coding upstream 155279 59137883 ~ 59138594 (+)
XLOC_000888 FP015850.1 non-coding upstream 162467 59131292 ~ 59131406 (+)
XLOC_000879 NA non-coding upstream 317186 58975017 ~ 58976687 (+)
XLOC_000901 NA non-coding downstream 242169 59545629 ~ 59547121 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000174_00213939_00219999 NA coding CI01000174 null 213735 ~ 219999 (-)