RNA id: TCONS_00003277


Basic Information

Item Value
RNA id TCONS_00003277
length 712
lncRNA type intronic
GC content 0.48
exon number 1
gene id XLOC_000889
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 59137883 ~ 59138594 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAGGAGGGCAAGACACAAAAGATCATTGCAAAAGAGGCCGGCGGTTCACGAAGATCTGTGTCCAAGCACATTAATTGTGGTAGGACAAAGTGTACAAGCAATAGGCATGACCGCGCCCTGGAGAGATCTGTAAAACAAAACGCATTTAAAAATGTGGAGGAAATTCACAAAGAGTGGACTGCAGCTGGAGTCAGGAAGAGAGGAGAGGCACACAATCCACGTTGCTTGATGTCCAGTGTAAAGTTTCTGCggtcagtgatggtttgggctgccaTGTCATCTGCTGGTGTTGCTCCACTGTGTTTTCTGAGGTCCAAGGTCAACACAGCTCTATACCAGGACATTTTAGAGCACTACATGCTTCCCATTGCTGACCAACTTTATGGAGATGCGGATTTAATTTTCCAACAGGACTTGGCACCTGCACACAGTACCAAAGCTACCAGTACCTGCTTTAAGGACCGTGGTATCTCTGTTCTTAATTTGCCAGTAAACTCGCCTAACCTTAACCCCACAGGAAATCTATGGGCTATCGTGAAGAGGAAGATGCGGAATGCCAGACCCAACAATGCAGAGAAGCTGAAGGCCACTATCAGAGCCACCTGGGCTCTCAGAAAACCTGAGCAGTGCTGAACACAGACTGATCCACTCCATGACAAGCCGCATTGCTGCAGCAATTCAGACAAAAGGAGCCCACACTGACTATTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003276 lncRNA upstream 71932 59065503 ~ 59065951 (+) True XLOC_000884
TCONS_00003275 lncRNA upstream 161196 58975017 ~ 58976687 (+) True XLOC_000879
TCONS_00003274 lncRNA upstream 178426 58956066 ~ 58959457 (+) True XLOC_000878
TCONS_00003271 lncRNA upstream 283506 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00001398 lncRNA downstream 8791 59147385 ~ 59150521 (+) False XLOC_000891
TCONS_00001399 lncRNA downstream 10148 59148742 ~ 59150521 (+) True XLOC_000891
TCONS_00003278 lncRNA downstream 23371 59161965 ~ 59162831 (+) True XLOC_000893
TCONS_00003279 lncRNA downstream 109536 59248130 ~ 59251679 (+) True XLOC_000894
TCONS_00003280 lncRNA downstream 173936 59312530 ~ 59313528 (+) False XLOC_000896
TCONS_00001392 mRNA upstream 45827 59090743 ~ 59092056 (+) False XLOC_000887
TCONS_00001393 mRNA upstream 45827 59090972 ~ 59092056 (+) True XLOC_000887
TCONS_00001391 mRNA upstream 46111 59090583 ~ 59091772 (+) False XLOC_000887
TCONS_00001390 mRNA upstream 48285 59088269 ~ 59089598 (+) True XLOC_000886
TCONS_00001387 mRNA upstream 48286 59073203 ~ 59089597 (+) False XLOC_000886
TCONS_00001395 mRNA downstream 4189 59142783 ~ 59146016 (+) True XLOC_000890
TCONS_00001396 mRNA downstream 7704 59146298 ~ 59149961 (+) False XLOC_000891
TCONS_00001397 mRNA downstream 7815 59146409 ~ 59151058 (+) False XLOC_000891
TCONS_00001400 mRNA downstream 15927 59154521 ~ 59158077 (+) False XLOC_000892
TCONS_00001401 mRNA downstream 15982 59154576 ~ 59157913 (+) True XLOC_000892
TCONS_00001394 other upstream 6477 59131292 ~ 59131406 (+) True XLOC_000888
TCONS_00001335 other upstream 964294 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1782850 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3840632 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 4009304 55128465 ~ 55128579 (+) True XLOC_000733

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU299763 True 397 lncRNA 0.49 1 NC_053133.1 21188300 ~ 21188696 (-)
striped catfish (Pangasianodon hypophthalmus) TU281005 True 319 lncRNA 0.47 1 NC_047609.1 8481372 ~ 8481690 (+)