XLOC_014004 (CR382300.1)


Basic Information

Item Value
gene id XLOC_014004
gene name CR382300.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19782413 ~ 19783624 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027953
TTTGAGCGTGAGACGGGTTTAATAGTCGGCCATCGCTCGCGGAGTATCTTCTGTTTCCTCTGTTGGTGGTTTATTTTCAGAAGTCATCAATCAAACGCTCAGCACTTACGAACCCTCACCCTCTCATCCTTCCTCCTTTTGAGCACAACGTTCCAAGCTTGAGTCACGGGAGTCAGCAGCGCCATGTAGGGCCTCGGCATAGCTTAAATTGTGAAAGCCCATTGCACGCCAGTTGTCTAAAACCTTGGATGCTCGAAAAAATACCAACAAGAAAATTGTCCTTCCACAGGAATGGGTTAAGCCGGTATATTTTGCTTCTCACCAAAAGGCTCATCGGAGCTTCCCTACAGTGGTTTGTCTTGTAGACGAGGAGGTTCGCGCCGCCTGAGAACAGCACCATTAAACAGCTTTTGGATCAGGAAGGAGTACCACTACAGATACCTTAGCCGACCACGCCGTGTGGAAATAGTCACACTGCTCGAGCTAGCGGAACGCTAGGTCAAAGTCTGGTTCTAAAACCGACGAATAAAACATAAACGTCAAACCAAAACTATGGACATCTACAGAAAACTAGGCAGGAAAAATGTCGATGAGTGTGGTGCAAAGAGCGACGAGGAAGCCTTCATTTGTGGCCCAAGTCATGGCAGATTGGTCGTTGTGGACGAAGAGTCGAACTCATTTTAAAACAACCTGTCATCCATCGCCGGACAGCCCTGTAATGAAAACGACATGcacaattttaaatgttttctaacAGATAAATGGAAAAGCATCTGAAAATTATTTTCAGTCAGTTACCAAATGCTCTGGAAAGGGGAACAATAATGcgctatagc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098798

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027953 True 836 transcribed_unprocessed_pseudogene 0.46 2 19782413 19783624

Neighbor

gene id symbol gene type direction distance location
XLOC_014002 hoxa9a coding upstream 2168 19747430 ~ 19780245 (+)
XLOC_014003 mir196a-2 coding upstream 34719 19747619 ~ 19747694 (+)
XLOC_014001 hoxa11a coding upstream 43490 19737214 ~ 19738923 (+)
XLOC_014000 hoxa13a coding upstream 51122 19729506 ~ 19731291 (+)
XLOC_013999 hibadha coding upstream 124874 19599528 ~ 19657539 (+)
XLOC_014005 hoxa1a coding downstream 2493 19786117 ~ 19787752 (+)
XLOC_014006 npvf coding downstream 193366 19976990 ~ 19980132 (+)
XLOC_014007 cycsa coding downstream 200557 19984181 ~ 19984573 (+)
XLOC_014008 osbpl3a coding downstream 205245 19988869 ~ 20033047 (+)
XLOC_014009 gsdmea coding downstream 254233 20037857 ~ 20054565 (+)
XLOC_013994 CR626877.1 non-coding upstream 517532 19264759 ~ 19264881 (+)
XLOC_013989 NA non-coding upstream 804134 18959908 ~ 18978279 (+)
XLOC_013987 FP074902.6 non-coding upstream 898878 18881888 ~ 18883535 (+)
XLOC_013986 NA non-coding upstream 947804 18833009 ~ 18834609 (+)
XLOC_014014 NA non-coding downstream 525266 20308890 ~ 20309259 (+)
XLOC_014016 NA non-coding downstream 881713 20665337 ~ 20668756 (+)
XLOC_014017 NA non-coding downstream 903985 20687609 ~ 20701153 (+)
XLOC_014024 NA non-coding downstream 1047213 20830837 ~ 21098279 (+)
XLOC_014026 NA non-coding downstream 1795645 21579269 ~ 21612272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_01238511_01240051 NA coding CI01000321 null 1238374 ~ 1240326 (+)