XLOC_001410


Basic Information

Item Value
gene id XLOC_001410
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41874937 ~ 41876777 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003460
CCTGGTGCTGCATCAGAGTTGAGTCGAATGCAGGTGAGCAGAGATCCAGTATCTGGACTGCAGGTGCTCTAGAAGCTCAGCAGCAGCAGGGCGTCCCAAAGTACTGCTCTCCACTTCCTTTCTGAGGAACTTCTTCCTGCGCACAAGAGCATTTGTGTTGCCGTTCTGATAAATGCCTCATGGACAATCATGCACCAGGAAGATGGCTTTGTGCATCTACATCTGGAGAAATTCAGTGAGAATACATTATTTACTGCATTAGAGTGGAGTCTGATGTGTATTAAATCCATTCTAATTCATTTCCAGTTGTTTCTAACAGAACAGTTAATCCGACTGCTTGACACAGAAAACTTTAAACTGTATTGCAGTAATTATAAAACACTGGATGTCAGTTAGTAAACAAACTAGGCCGACAGTACTATAAGCAGTGGTGAGGCTAAAGGGCCAGGGTGGCTCTGGCCCACTCAAATTAAAGGCTGGCCCGCCCAGACGAAAATATTTGAAAGCTAAAAAATTCtgcaataaaaacatgtaaagaaTGTGAGGCGGAATATGAATGTAATTGAATGTTGACGAATAACAGTACCATTTAGTTATTGTAAATTtgtcaaaaacatttaaagtttgtGCTGATGAGCACTTTTGTTTTTGGCTTGATTTGATTGACAGAGGCGGCAGCAGCTCTGAAAATGAAACTAGAAGTGCTGTCCAGCTGACTATTCGGATTTGCTGGTCAAAAACATTAGaagtaataaaatgacaaatgagtAATATAAGAGAGGCATAATAAGAGATGAATCTGGTTTAACTTGTTTTCAACATTACATTAAATGCCTTATTTTGGTAGTTTAGTTGTACTGTTGCAGTGTAGTAATCTTGTTAGGCGATCGTTTGGAGTTTTACACTTCAAAAGTATGAAGAATATAACATTTGTTGATCTTATTTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003460 True 947 lncRNA 0.39 2 41874937 41876777

Neighbor

gene id symbol gene type direction distance location
XLOC_001409 rnf24 coding downstream 57153 41770842 ~ 41817784 (-)
XLOC_001408 NA coding downstream 113775 41757056 ~ 41761162 (-)
XLOC_001406 NA coding downstream 266235 41599218 ~ 41608702 (-)
XLOC_001407 BX005288.1 coding downstream 273785 41601035 ~ 41601152 (-)
XLOC_001405 NA coding downstream 283803 41588155 ~ 41591134 (-)
XLOC_001411 adra1d coding upstream 80433 41957210 ~ 41982582 (-)
XLOC_001412 BX927206.1 coding upstream 400746 42277523 ~ 42277650 (-)
XLOC_001413 si:ch211-71k14.1 coding upstream 404531 42281308 ~ 42289861 (-)
XLOC_001414 lrrtm1 coding upstream 899776 42776553 ~ 42779075 (-)
XLOC_001415 CR925858.1 coding upstream 1097983 42974760 ~ 42974875 (-)
XLOC_001404 NA non-coding downstream 341449 41532664 ~ 41533488 (-)
XLOC_001416 NA non-coding upstream 1254113 43130890 ~ 43155453 (-)
XLOC_001417 NA non-coding upstream 1641432 43518209 ~ 43617169 (-)
XLOC_001427 CR385050.3 non-coding upstream 2075521 43952298 ~ 43953627 (-)

Expression


Co-expression Network