XLOC_014112 (maco1a)


Basic Information

Item Value
gene id XLOC_014112
gene name maco1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29303847 ~ 29333867 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028123
gtttttatttatttctttgtgtcTACTAGAAGAAAAACACTGACATCCTTGCATTCGCGTAGCGATGCGCATCAGTATTAGGACGTCCACGTAGTTTCCCCTCGAGTGTTCGAAGTTGCTGGAATTTAAAGGGTGGAGAATGAAGCGGCGCAATGCGGACTGCAGCAAACTCCGTCGCCCGTTGAAACGGAACCGAATCACCGAGGGTATTCACAGCAGTGCTGAAAGGAGCATGCGCTCTGAACTCGGCCAGCTTCGACAGGAAAATGAGCTGCTGCAGAACAAACTCCATAATGCTGTGCAAGCCAAGCAGAAGGACAAGCAAACCATTGTGCAGCTGGAGAAGCGGCTCAAGGCGGAACAGGAAGCTCGAGCCGCAGTGGAAAAGCAGCTtgcagaagaaaagaaaagaaagaagatgGAAGAGGCCACAGCCGCACGTGCT
>TCONS_00028124
gtttttatttatttctttgtgtcTACTAGAAGAAAAACACTGACATCCTTGCATTCGCGTAGCGATGCGCATCAGTATTAGGACGTCCACGTAGTTTCCCCTCGAGTGTTCGAAGTTGCTGGAATTTAAAGGGTGGAGAATGAAGCGGCGCAATGCGGACTGCAGCAAACTCCGTCGCCCGTTGAAACGGAACCGAATCACCGAGGGTATTCACAGCAGTACCTTCCTGTACCTGAAGTTCCTGGTCGTTTGGGCGCTGGTTCTGCTGGCTGATTTTGTGTTGGAGTTCAGGTTCGAGTACTTGTGGCCTTTTTGGCTTTTCATCAGGAGTGTTTATGATTCCTTTAGATATCAGGGACTGGCATTCTCTGTGTTCTTTGTGTGTGTCGCATTCACATCAGACATCATCTGCCTCCTGTTCATCCCTAAACAATGGTTGTTCTTCGCTGCCAGCACTTATGTCTGGGTACAGTACGTGTGGCATACAGAGCGAGGTGTGTGTCTGCCGACTGTCTCTCTCTGGATTCTTTTTGTCTACATCGAAGCAGCCATTCGATTCAAGGACTTGAAACATTTTCATGTAGACCTTTGCCGTCCATTCGCAGCTCACTGTATTGGCTATCCGGTGGTGACGCTAGGCTTCGGCTTCAAGAGTTACGTGAGCTACAAGATGCGTCTGAGAAAGCAAAAGGAAGTGCAGAAGGAAAATGAGTTTTACATGCAGCTCCTACAGCAAGCTCTGCCTCCAGAACAGCAGATGCTTCAAAGACAGGAACGAGAGACAGAGGAGGCCACCTCAAAAGGCATGTCTGAAGCAGACTCTGTGTTAGTGGCTCAGAACGGCACTGCAATCAACAAGAAACTGCCCATCTCTCTGCCTGAACTGGAATACAAAGAGAAGGGCAAAGATAGTGCAAAAGACAAAAAGCAACAGCAGCACAGCATAGGAATAAACAACAACATCCTACAGACTGTAGATGCTAAACTACAAGACATTGAGTACATGGAGAACCACCTAAACGCTAAAAGACTCAACAACGAGCTCGGCGGCAGTGCCGAaaacctgtttctgaaagaggAAGTGGGTGCCGGAGGAGGCTCTGCGCCCTCCAAACATTACAAAAACTCCTCGCCACGCAGCCACAACTCAACCAATGGCAGCGTACCATCATCTTCATCCAACAGAAGCGATAAAAAGCAGAAGTGCACAGGGAAAAACCTTGCGCCACATCGAGATTTGATGGAGAACTGTATACCTAATAACCAGCTCAGTAAGCCTGATGCATTAGTTCGGCTTGAGCAGGATATTAAGAAGCTGAAGGCTGACCTGCAGGCGAGCAGACAGGTGGAGCAGGACCTGCGCAGTCAGATCAGCTCTCTGAGCAGTGCTGAAAGGAGCATGCGCTCTGAACTCGGCCAGCTTCGACAGGAAAATGAGCTGCTGCAGAACAAACTCCATAATGCTGTGCAAGCCAAGCAGAAGGACAAGCAAACCATTGTGCAGCTGGAGAAGCGGCTCAAGGCGGAACAGGAAGCTCGAGCCGCAGTGGAAAAGCAGCTtgcagaagaaaagaaaagaaagaagatgGAAGAGGCCACAGCCGCACGTGCTGTCGCTCTGGCTGCTGCATCCAGAGGAGAGTGCACAGACTCGCTGAAGAGTCGCATACGTGAGCTGGAGTCCGAGTGCAAGAAGCTCACACACGACATGAAGCTGAAGGAGGAACAGATCAGAGAGCTCGAGCTCAAAGCACAAGAGTTGCACAAATATAAGGAGAATGAAAAGGACACAGAGGTTCTGATGTCAGCACTTTCAGCCATGCAGGACAAGACCCAGCACTTGGAGAACAGCCTGAGTGCTGAAACCAGAATCAAACTGGACCTCTTTTCAGCACTCGGAGATGCCAAGAGACAGCTGGAGATTGCTCAAGGTCAGATTCTGCAGAAGGAGCAGGAGATAAAAGAGCTGAAGCAGAAGATCGCAGAGGTCATGGCAGTCATGCCAAGCATCACCTACTCGGCGGAGACCAACAACATGACCCCTGTGACCCCACATTACTCCTCCAAGTTCATGGACACCAGTCCTTCCAGCTTGGACCCCAATGCCTCCGTCTACCAGCCGCTCAAGAAGTGAATGTCCACACACATCGTCCAGTTTGCTGTTTGATTTGTACTAAAGTTCAGTATGCAAACCAATGGGATGGGGTagtatttttgtttgatttaccCCTCCTCTGTTAGTATGACTCTTCTTTGTTGTGGATGATTAGAGAAGGAGAATAAAATAAGGGGGAAAAGGGATGACGATTTGACCAGAACTGCCCTTTTTGTCTTTAaggttatttttgaaaaaaaaacaagttttcgATAACGGCACTTAAGCCACTTGTGGTTCTCTTGTCATCCTACGTTCATTTTGTGAGGTCTTTATTAAGATCTTTTATTAGTACCTCCTCCATCTTTGTGTTGAACAGTTTTATGTGCCAGACAATGGTGGcatgactttctttttttacttcCCTGGTGTAAACGTACCATCTTTAAGtttattgaatgtaaaaaaaaaaaaaaagaaaa

Function

symbol description
maco1a Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in endoplasmic reticulum; membrane; and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane. Orthologous to human MACO1 (macoilin 1).

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0023041 neuronal signal transduction biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1097 Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in endoplasmic reticulum; membrane; and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane. Orthologous to human MACO1 (macoilin 1).

Ensembl:

ensembl_id ENSDARG00000005625

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028123 False 445 processed_transcript 0.50 3 29303847 29320883
TCONS_00028124 True 2577 mRNA 0.47 11 29303847 29333867

Neighbor

gene id symbol gene type direction distance location
XLOC_014111 CU469458.1 coding upstream 100590 29203142 ~ 29203257 (+)
XLOC_014110 NA coding upstream 196153 29105935 ~ 29107694 (+)
XLOC_014109 NA coding upstream 479457 28788968 ~ 28824390 (+)
XLOC_014108 lpcat1 coding upstream 969683 28291062 ~ 28334164 (+)
XLOC_014107 mrpl36 coding upstream 1013634 28284120 ~ 28290213 (+)
XLOC_014113 ldlrap1a coding downstream 3922 29337789 ~ 29363779 (+)
XLOC_014114 NA coding downstream 125250 29459117 ~ 29607003 (+)
XLOC_014115 NA coding downstream 412271 29746138 ~ 29751743 (+)
XLOC_014116 marcksl1b coding downstream 464197 29798064 ~ 29800812 (+)
XLOC_014117 hdac1 coding downstream 474604 29808471 ~ 29821601 (+)
XLOC_014106 BX511306.1 non-coding upstream 1160593 28143135 ~ 28143254 (+)
XLOC_014104 NA non-coding upstream 1327364 27974665 ~ 27976483 (+)
XLOC_014123 BX510301.1 non-coding downstream 1184588 30518455 ~ 30518573 (+)
XLOC_014124 BX510301.3 non-coding downstream 1253999 30587866 ~ 30589951 (+)
XLOC_014125 CU463182.1 non-coding downstream 1297076 30630943 ~ 30631060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08953766_08966617 TMEM57, TMEM57A coding CI01000054 null 8952134 ~ 8966617 (-)