XLOC_014113 (ldlrap1a)


Basic Information

Item Value
gene id XLOC_014113
gene name ldlrap1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29337789 ~ 29363779 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028125
AGGAGGTTCAAGTATTTCCACAGATGTCGGCATCCAAACGCCAACAACAAAGTTGAGGGAGCGAGAAGCCGTAGTTCATGGCCAGCAAGCTGCACCTGAAGACGCCTCACCGCTTCTAAACTCGCCATGGATGTGCTGAAATCAGCCAGAAGGGCTTTCATTCGCAGCCCCAGCCTGACCAAACAGTCCTGGAGCTCAGGCAAACACAAAAAATTGCCTGAGAACTGGACTGACACAAGAGAGACTCTGCTGGAGGGAATGACCTTTAACCTTCGACATCTGGGGATGACACTGGTGGACCAACCTAAAGGAGAGGAGCTCTCAGCTGCTGCTGTCAAGAGGATTGTTGCCACGGCCAAAGCCAGTGGGAAgaaactgcctaaagtggccctgAAAGTGTCTCCTCAGGGAATCATCTTGTACGACAGTGTGTCAAACCAGTTGATCGAGAACATTTCCATATACAGGATATCATACTGCACAGCTGACAAGACGCATGACAAAGTGTTTGCTTTCATCGCCCAGAACCAACAGAATGAAACTCTGGAGTGTCACGCATTCCTCTGTGCCAAACGGAAAGTGGCCAAGGCGGTCACGCTCACGGTGGCTCAGGCCTTCAGAGTGGCCTTCGAGTTCTGGGAGGTTGCCAAAGACGAGAAAAAATGGGATTCAGCTGGAGAAACATCCAACAGCTCACAGTCTGACCGATCTGTCAGCCTGACCAGCCTGAAAGTAGGAGCTGCAGCAACAGAGAACCTGTTGGAAATCGAGGACTACACATCGGCTTTGGAAAATGTTGACAACCACACCGAACCCAACAACAACACCACCACCCTATGGGAGATGGATGATGGTCTGGAAGAGGCTTTTTCAAGACTCGCTGAGTCTCGTACTAACCCCCAGGTCCTGGACATTGGGCTGAGCTCTGAGAGTGAATGGGATGAAACCAATGGAAACTCGCCAAATGCCAATGAGCTCTGCGGCTTCTGAGCACAGATCCAGAGCCTGCGTTCAGTCTGGTCCTGCTCATCCCTGTTATCACCACACCAAAGCAATATCAGATGAGTCTATTTTTgctaaaggaaaaaaaagtgaCACTGCGCTGAGTTTACATGCTTTATTTTTATCAATCAAGTTGTATACAGAATATATGTAGATACCAGAGTCAGTATTGTTTTTCATGTATGAAAAGGAAAAAAGTTTATGGTAAATATAACATTGTGTATATACAGGTGCACTATAGAGTTATTTTAGAGTCTAACCCTGTAGTTTGCTGCTTCAAGATTCATTTATCACCACAATGCCCTTCATTAATAATATGGAAATCAGCGTTAAAGTCACAGTACTGCTTGTCATTTGAGGATTGTGAGTTGTGTGTCAGTATTtacttgtatgttttttttctatttaatcagaattgtattattgttataaCACCCTAAGGGGCCATATAATATTTCTCTAAAAAGTCTAATAAAAGTGTTAATATT

Function

symbol description
ldlrap1a Predicted to be active in early endosome. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; axis; cardiovascular system; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in autosomal recessive hypercholesterolemia. Orthologous to human LDLRAP1 (low density lipoprotein receptor adaptor protein 1).

GO:

id name namespace
GO:0005769 early endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030328-13 Predicted to be active in early endosome. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; axis; cardiovascular system; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in autosomal recessive hypercholesterolemia. Orthologous to human LDLRAP1 (low density lipoprotein receptor adaptor protein 1).

Ensembl:

ensembl_id ENSDARG00000004311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028125 True 1490 mRNA 0.45 9 29337789 29363779

Neighbor

gene id symbol gene type direction distance location
XLOC_014112 maco1a coding upstream 3922 29303847 ~ 29333867 (+)
XLOC_014111 CU469458.1 coding upstream 134532 29203142 ~ 29203257 (+)
XLOC_014110 NA coding upstream 230095 29105935 ~ 29107694 (+)
XLOC_014109 NA coding upstream 513399 28788968 ~ 28824390 (+)
XLOC_014108 lpcat1 coding upstream 1003625 28291062 ~ 28334164 (+)
XLOC_014114 NA coding downstream 95338 29459117 ~ 29607003 (+)
XLOC_014115 NA coding downstream 382359 29746138 ~ 29751743 (+)
XLOC_014116 marcksl1b coding downstream 434285 29798064 ~ 29800812 (+)
XLOC_014117 hdac1 coding downstream 444692 29808471 ~ 29821601 (+)
XLOC_014118 si:ch73-130a3.4 coding downstream 490444 29854223 ~ 29860334 (+)
XLOC_014106 BX511306.1 non-coding upstream 1194535 28143135 ~ 28143254 (+)
XLOC_014104 NA non-coding upstream 1361306 27974665 ~ 27976483 (+)
XLOC_014123 BX510301.1 non-coding downstream 1154676 30518455 ~ 30518573 (+)
XLOC_014124 BX510301.3 non-coding downstream 1224087 30587866 ~ 30589951 (+)
XLOC_014125 CU463182.1 non-coding downstream 1267164 30630943 ~ 30631060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding CI01000054 null 8937312 ~ 8942587 (-)
bowfin (Amia calva) AMCG00011049 ldlrap1,arhb,LOC106579967 coding CM030133.1 CM030133.1 8866341 ~ 8886705 (-)