XLOC_014145 (stmn2b)


Basic Information

Item Value
gene id XLOC_014145
gene name stmn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31771270 ~ 31790551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028176
CACCGCTGACAAGCTCCTGTACATTAGACCGGGCGCGAGACAGCCTTTCACTCGGCGCTGCGCGTTAAGGGACAACAGCAGCCAATCTGACTGAACCCACGCCCGCTCCTCATCCCTGAAGCCGCACTCTTTCCCTCAGAGCGTCGATCTGCTGACTCAGTGCCTTATCAGAACCAACCGGTTCCTCGCCACCGAATAAAGCTGAGACGCACCAGTCACCGACACAACTCCAGCCATGGCCAAAACTGCGATCGCATACAAAGAGAAGATGAAGGAGCTTTCCCTCGTCTCCCTCATCTGCTCCTGTCTCTACCCAGAGGCACGCAAGAACATCATGGGCGAGTTTGAAGACATGGAGGTTAAGGCCATTAATAAGCGGGCTTCAGGTCAGGCCTTTGAGGTCATCCTGAAGCCTCCTTCTCCAACAACTGAAGGAGGCTACAGCATCACTTCACCTCCGAAGAAGAGGGACATGTCACtggaggacatccagaagaagcTGGAGGCAGCTGAGGACAGGAGGAGATCCCAGGAGGCTCAAGTCCTGAAGGCTCTGGCTGAGAAGCGTGAGCATGAGCGGGACGTCCTACTGAAAGCCATGGAGGAGAACAGTAACTTCAGCCGGATGGCAGAGGAAAAACTGATCCTGAAGATGGAGCAGATCAAGGAGAACCGTGACGCACACCTTGCAGCAATGATGGACCGACTGCATGAGAAGGAGAAGCACGCTCAGCTGGTGCGCAGAAACAAAGAGCTGAGGGAAGAACTGACAGCATGAGCACATCTCTACATCCCCCACCCCCCTCCCAATACCTGCGACCCCACCCTTCTCACCCCGCCACCGCTATCCCATGTAGAAAAGAGCCTCTGACACCCCAAATCCAACCCCCCTTCTGCCCCGTCCCGCCCAGGCCAAGGGAATCGACCCGCCCCCCTCACCAACCGCATCCTCCCCATTATAGTCCATAAGACAAAAGGAACACAATGTTTTTGATCAATTCCAAACCAGTCAAAGTGGGTGTGGTTTTTTTGTAAatacttcctgtttgttttatatGAGACGATGAAAAGTATTGCGGTGtgccattttttaaaagtttctctCTGTATCTTTCTCTTTTAGTGGATGTacttgtttcttcttcttcttcttcttcttctctttttCTCGATCAAATCTGCTACAGTTTCTCTCGTACCAGGCTTTGGTGTTTGTGAGTTTGCTGGATAGCTGACATTTGCAACGTCTTCTTGAAACCCAACGTTCTCTGATGTCTGTTTGGAAAGAATAAAAGACACCACAGTACAGTACCGTACAGGTtgcaaacaatatttacaaacagTCTCTTACAAAGTCTTCATACATCCATACAGTGGCATATAGTCAtgacacaaagacacacacacacacactcatataaatGAGTTTAGTCAGCATGATTTCCATGTTGCTCAAGAGGAGTTGTGAAATTAGCCATGGTTAAGTCATATGATGTCTCTTGACCCCTGTTTGACCAGTCTGGGTTGTATTTGTATTGACAGCGTAACAGAAAGTGAGTTCTTGAGAATTGGGTATTGTTCTGATTCTTCAAAGAATTTTTGGAGGGTGTTAAAATtgatgtgtaagtgtgtgtgtgtgtgtgtgcgtttcgaGAACAGTGCGGGTGGACGGTGTTATAATGTGCCATTGCTCTTGTGTAAGTCACCAAACCAGCCCACCCTCATCTTTCTCCTCCTCCAGCTGTGTGTTTTCTTCCCTTCACACATGTAACTTTGGGAGCAAGCTGTGGTGAATAAAGGCTTGGGATTCTTGGAATGAGAA

Function

symbol description
stmn2b Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in several structures, including basal plate midbrain region; nervous system; pronephric duct; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).

GO:

id name namespace
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0007399 nervous system development biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0030426 growth cone cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-207 Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in several structures, including basal plate midbrain region; nervous system; pronephric duct; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).

Ensembl:

ensembl_id ENSDARG00000070537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028176 True 1822 mRNA 0.48 5 31771270 31790551

Neighbor

gene id symbol gene type direction distance location
XLOC_014142 gmnn coding upstream 178845 31541607 ~ 31592425 (+)
XLOC_014144 BX957279.1 coding upstream 179730 31591524 ~ 31591540 (+)
XLOC_014143 acot13 coding upstream 191887 31576849 ~ 31579383 (+)
XLOC_014141 tmem64 coding upstream 217752 31532043 ~ 31553518 (+)
XLOC_014140 pip4p2 coding upstream 340243 31404686 ~ 31431027 (+)
XLOC_014146 NA coding downstream 9954 31800505 ~ 31859540 (+)
XLOC_014147 si:dkeyp-34f6.4 coding downstream 82757 31873308 ~ 31895595 (+)
XLOC_014148 tpd52 coding downstream 114285 31904836 ~ 31939039 (+)
XLOC_014149 NA coding downstream 152957 31943508 ~ 31954728 (+)
XLOC_014150 NA coding downstream 164408 31954959 ~ 31969766 (+)
XLOC_014139 NA non-coding upstream 422922 31250920 ~ 31348348 (+)
XLOC_014138 NA non-coding upstream 553171 31157647 ~ 31218099 (+)
XLOC_014137 NA non-coding upstream 618180 31138827 ~ 31153090 (+)
XLOC_014133 NA non-coding upstream 801245 30969012 ~ 30970025 (+)
XLOC_014151 BX119962.1 non-coding downstream 267926 32058477 ~ 32058599 (+)
XLOC_014158 NA non-coding downstream 926027 32716578 ~ 32718796 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding CI01000054 null 7606500 ~ 7611037 (-)