XLOC_001423 (scpp5)


Basic Information

Item Value
gene id XLOC_001423
gene name scpp5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43909933 ~ 43915567 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002338
CGATTCAACCTGCAGCAAAGGTGACCACGCTGACTGACCCTTCTTGTGCACTGTTTGCTGATTCAATAACCATGTGGACGTCTCTCCTGTGTCTTCTGCTGGCCGGTGCAGTGTCTGCCGCTCCACTTTCACCGTTTTTCAATTATCTCCCTCATTATGGCAGCCCGAGGCAGggGAATACTGGTGGCTTCCAGGGAATGCCATCACAGCCACATCCTGCTATGAATGCTCCGATCAGCATGGAAATCATTTTCCCTCCGCGATTCCCTGCTAATCCAGCAGGAGGAGCAGCGGGAACATCGTCATTCCCCACACAAGCGTTCATCAAGTACTCGCTCCCCAAAGCTCCCGGCAGAAAAAGCGTTGAAATCTTTTACCCCTACGACTTCGGTAGAGCTCAGGATCAACCAAATGTCCCCCTCATACCTCAGCTTCCAAATatCTTCCCCTTTGACTTGATGCCACAGACAGTTCCTCAACAGCCACCTGTGaaCCCACCATTCCAGGATGGTGCTCCACAAACCCAAGAGCCTCAGCAGCAAACCCAGCCggagcaacagcagcagcagcagcagcaacaggcTCAGACAGGAcagGTGTCTACCAGACCATGAAGATCGACTCATCTGGGAAGCAGGAAAAAGACATCAAGCAGCAAGagcaatgaacatttttttttcttcttgtattGCTGTTGTCTGATGCTATTTAGAATTAGTAAAAACCTTTACTGGAATAATCATTGAGCTGATTTTGATTTTTAACATGAAGGTGATGATCTACCCATAACACAACTTCTGTAATTGCATGATGTaaagataattaaaaatgataatttaacAATCAAACCTTATTTCAATCTCAGATGTCAGTTCTGTATCATGTAGTCCTTTTGTGATTAGTGTAATAAAGTTGATTAAAC
>TCONS_00002339
ATGTGGACGTCTCTCCTGTGTCTTCTGCTGGCCGGTGCAGTGTCTGCCGCTCCACTTTCACCGTTTTTCAATTATCTCCCTCATTATGGCAGCCCGAGGCAGggGAATACTGGTGGCTTCCAGGGAATGCCATCACAGCCACATCCTGCTATGAATGCTCCGATCAGCATGGAAATCATTTTCCCTCCGCGATTCCCTGCTAATCCAGCAGGAGGAGCAGCGGGAACATCGTCATTCCCCACACAAGCGTTCATCAAGTACTCGCTCCCCAAAGCTCCCGGCAGAAAAAGCGTTGAAATCGATCAACCAAATGTCCCCCTCATACCTCAGCTTCCAAATatCTTCCCCTTTGACTTGATGCCACAGACAGTTCCTCAACAGCCACCTGTGaaCCCACCATTCCAGGATGGTGCTCCACAAACCCAAGAGCCTCAGCAGCAAACCCAGCCggagcaacagcaTTTTTCAGGAATGGCTGATTATGTGCATGTGTCTACCAGACCATGA

Function

symbol description
scpp5 Is expressed in mandibular arch skeleton and odontoblast.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-256 Is expressed in mandibular arch skeleton and odontoblast.

Ensembl:

ensembl_id ENSDARG00000078622

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002338 False 922 mRNA 0.46 12 43909933 43915567
TCONS_00002339 True 507 mRNA 0.52 10 43910360 43915423

Neighbor

gene id symbol gene type direction distance location
XLOC_001422 enam coding downstream 4670 43901966 ~ 43905263 (-)
XLOC_001421 cnga1a coding downstream 10511 43894238 ~ 43899422 (-)
XLOC_001420 tacr3a coding downstream 17584 43801957 ~ 43892349 (-)
XLOC_001419 SLC9B2 coding downstream 182320 43695033 ~ 43727613 (-)
XLOC_001418 suclg1 coding downstream 225349 43652480 ~ 43684584 (-)
XLOC_001424 scpp7 coding upstream 2367 43917934 ~ 43920576 (-)
XLOC_001425 ambn coding upstream 10586 43926153 ~ 43933271 (-)
XLOC_001426 si:dkey-22i16.7 coding upstream 30062 43945629 ~ 43948826 (-)
XLOC_001427 CR385050.3 coding upstream 36731 43952298 ~ 43953627 (-)
XLOC_001428 odam coding upstream 42631 43958198 ~ 43963441 (-)
XLOC_001417 NA non-coding downstream 292764 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 754480 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 non-coding downstream 935058 42974760 ~ 42974875 (-)
XLOC_001412 BX927206.1 non-coding downstream 1632283 42277523 ~ 42277650 (-)
XLOC_001410 NA non-coding downstream 2033156 41874937 ~ 41876777 (-)
XLOC_001440 BX908740.2 non-coding upstream 619058 44534625 ~ 44536218 (-)
XLOC_001453 NA non-coding upstream 1177377 45092944 ~ 45096173 (-)
XLOC_001458 LO017716.1 non-coding upstream 1391594 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 1723565 45639132 ~ 45647846 (-)

Expression


Co-expression Network