XLOC_014266


Basic Information

Item Value
gene id XLOC_014266
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42560956 ~ 42603289 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028347
GGCTGGAGCATCATTTCCCTCTGGACGTGTGACCCACAGACGTTCATTACGCTTCAATCTGCATCACCTGAGCCAGTGCTGAGGCGGACTCCACCCAGACAGCCGGAGGGATGTGGGTTCCAGACTGTTATCTCTGCACAGGCCTGAATGAGGTCACTGGACTGAAAGCCGTCATAAACCATGGTGTGATTGAACACTGGGCTGACAGAACCACGGACCACACGAGTCTGCTGACCGCTGACACCACTCTCATCTGGGTTTTTCTCACCTGGAATCGAAGAAAGTGCCGTCCAGCAGAGAGCCGTTATAATGATAACGCATGAAGTCTCCAACTTGACTCTTGCGTGGACAAGGATCTGGAAGGTATTCTACCTTTACTGCGATTTCATCTTTGGGGTTATGAAGGTCCAGCAGAACCACATCGAACACCAGAGAAGCCTGAGCGGGGATGTCACTTCCTGTATGAGGAGATAACTCCCAGGAAAGGTGGCAAGGTGATGATGCGTTTTTCTCCCACACACATTCCTAGAAGCCCCTGGTCCATTCCTGCAATCAGCCAGCCAATGCCCACgTCCACACAAATGATCTCACCTGGAGTCGAACAGCGTGCCATCAAGCAGAGTGCCATTGTAGTGGTAGCGGATATAATCAGACACTTGTACTTTTCGCTCACAGCTCTCCGGCATGTGGTAGGTCTTTATCTGCACCTTGTCTTCTTTGTTCCAAATATCCAACATCAGCACATCAAAGTGAAGGATGGAGTCTGGAGGGATGATGTCACCTGATGGGAAATGACATAAAACTACTGtgtgaggggaaaaaaataatacaaacctGCTTGGCAGCTCTAGCACCTGCCCATCTAGAACCACAATAAATGCTGTGGTCTTTGTGTTTACTATAAAGGTTGCATTATTAGTTTGCTAGCAGAGTTCAATGCAAGTAACAGTG

Function

GO:

id name namespace
GO:0019482 beta-alanine metabolic process biological_process
GO:0019483 beta-alanine biosynthetic process biological_process
GO:0050878 regulation of body fluid levels biological_process
GO:0042133 neurotransmitter metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0007599 hemostasis biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028347 True 951 lncRNA 0.49 5 42560956 42603289

Neighbor

gene id symbol gene type direction distance location
XLOC_014265 NA coding upstream 13752 42518577 ~ 42547204 (+)
XLOC_014264 BX950855.1 coding upstream 44822 42505974 ~ 42516134 (+)
XLOC_014263 si:dkey-166k12.1 coding upstream 75892 42469058 ~ 42485064 (+)
XLOC_014262 pogza coding upstream 104955 42432625 ~ 42456001 (+)
XLOC_014260 anp32e coding upstream 219141 42328423 ~ 42341815 (+)
XLOC_014268 crtap coding downstream 5843 42609132 ~ 42617723 (+)
XLOC_014269 fbxl2 coding downstream 56869 42660158 ~ 42682947 (+)
XLOC_014270 clasp2 coding downstream 90566 42693855 ~ 42802298 (+)
XLOC_014271 ubp1 coding downstream 203523 42806812 ~ 42841889 (+)
XLOC_014272 pdcd6ip coding downstream 244017 42847306 ~ 42875185 (+)
XLOC_014261 BX571688.1 non-coding upstream 223525 42337317 ~ 42337431 (+)
XLOC_014257 CU896644.3 non-coding upstream 371852 42188990 ~ 42189104 (+)
XLOC_014255 NA non-coding upstream 420302 42127923 ~ 42140654 (+)
XLOC_014274 dre-mir-128-2 non-coding downstream 312130 42915419 ~ 42915541 (+)
XLOC_014279 CU207343.4 non-coding downstream 474455 43077744 ~ 43077879 (+)
XLOC_014280 CU207343.3 non-coding downstream 477636 43080925 ~ 43081060 (+)
XLOC_014282 NA non-coding downstream 647264 43250553 ~ 43251194 (+)
XLOC_014291 NA non-coding downstream 943358 43546647 ~ 43549011 (+)

Expression


Co-expression Network