XLOC_014272 (pdcd6ip)


Basic Information

Item Value
gene id XLOC_014272
gene name pdcd6ip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42847306 ~ 42875185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028362
GTACATCTGACGTGATGACGCACCCGAGAGAACCAGGAAGCGCTCAGCCTTTGTTTTTGTCCGTCTGCAGTGCTCTCATTTTCCACAAGAACCGTGTCGTTTCCGCGGGCCCAAATGGCGACGTTTATTTCTGTCCCGTTGAAGAAGTCCTCGGAGGTTGACCTTGTTAAACCGTTGTCAAAATTTGTCACGGCCACGTATCCTCCGGGTGAGGAGCAGGCGGAGTATTTGCGCGCCGTGGACGAGCTCAACAAGCTCCGGAAAAGTGCTCTGGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAGATCCTGCTGCGATATTATGATCAGCTCTGTGCAATCGAACCCAAATTTCCCTTTCCAGAGttatGTCTAACATTCACATGGAAAGATGCTTTTGATAAAGGATCTCTTTTTGGAGGCTCGGTCAAGCTTGcattgGCGAGTCTGGGCTATGAGAAGACGTGTGTGTTGTTTAATGTGGGCGCTCTGGCCAGTCAGATCGCTTCCGAGCAGAATCTCGACAATGATGAGGGACTCAAAACTGCCGCCAAGTTCTACCAGCTGGCGAGTGGAGCGTTTGCTCATATAAAGGACACCGTTCTGTCTGCCCTGAATCGAGAGCCCACCATGGACATCTCTCCCGAAACAGTGGGCACGCTCAGTCAGATCATGCTCAGTCAGGCTCAGGAGGTCTTCGTTCTCAAGGCCACTTCTGACAAGATGAAGGACGCCATTGTCGCTAAGCTTGCCAACCAGGCGGCAGATTATTACGGAGATGCTTTTAAGCAATGCCAATACAAAGAGAATCTGCCTAAGGACGTGCTTCCGGTCCTTGCCGCCAAGCACTGCATGATGCAGGCCACCGCCGAGATGCACCAGTCAGCCCTGGCCAATCAGAAGAAAAAGTTCGGGGAGGAGATCGCCCGGCTGCAGCACGCACAAGAGCTGGTGAAGACGGCGGCTTCTCGATACGACGAGTATGTTAATGTGAAGGATCTGTCAGATAAGATCAACAGAGCGCTTACAGCTGCAAAGAAAGACAATGACTTCATTTACCATGACCGCGTACCGGAGGTCAAAGACCTGGAGCACATCGGCAAAGCATCTCTGGTCAAAGCAACTGCAGTTCAGACACCACTCAGCCAGAAGTTCACAGaTCTGTTTGAGAAGATGGTGCCGATGGCGGTGCAGCAGTCTGTGAGTGCAGCCAATTCCAGAAAGGCAGAAACAGTCAACAGACTCATCGGCAGCATGAGAGAGGCAACCAATCTCTGCAACGGGGTGTTGGCATCCTTGAACCTGCCGGCTGCTCTTGAAGATCTGTCAGGAGACGCAGTTCCTCAATCCATCTTGGAGAAAAGCCGTGCTCTCATCCAGCAGGGCGGCCTTCAGAGCATCGAGCAGCTGATTAAAGATCTTCCAGAGCTCCTGCAGAGGAACCGAGAGATCCTGGATGAGTCCTTGAAGATGTTAGATGATGAGGAAGCGACAGACAATGAACTCCGAGGCAAATTCAATCAGCGCTGGAACAGAACTCCCTCTGGAGATCTGTATAAACCACTCAGAGCAGAGGGAAATAATTTTCGCAATATATTGGACAAGGCGGTGCAGGCCGATCAGGTGGTGAGAGAGCGTTACACGGCACATTGTGAGATGATTGCTTTGCTCTGCAAGCCAGAGAATGAGCTCAGTGCTGCCATACCGTCTGCCAACCCTGCCAAGACTCTGCAGGGCAGCGAGGTGGTAAATGTGTTGAGGTCTCAGCTGGCGCAACTGGATGAGGTCAAGAGGGAACGAGAAGTTCTGGAAGGAGAGGTGAAGTCAGTGACCTTTGACCTGACGGCAAAGTTTCTTACAGCACTGGCTCAAGATGGCGCCATCAATGAGGAGGTCATGACCAGCAGTGAGCTTGACGCTCGATACGGCTCACACAATCAACGCGTTCAACAGAACTTACGCAGACAGGAAGAGCTGCTGTCACAGATACAGGTTTCTCACCAGGAGTTTTCAGCACTAAAGCAGTCCAACTCTGAGGCTAATACCAGGGAGGACGTGTTGAAGAAACTGGCCTCCGCCCACGACAGCTACATCGAGATCAGCTCCAATATCAAAGAAGGCACTAAATTCTACAATGATCTGACAGAAATCCTGCTGAAGTTTCAAAATAAGTGCAGCGACATTGTCTTCGCTCGCAAAACTGAGAGAGATGAACTGCTCAAGGAGCTGCAGCAGAGTATTGCTCGAGAGCCAAGCGCTCCTTCATTCAGCGTCCCGTCATACCAGTCCAACACCCCTGCCCCTGCAGGAGGCCCGACCCCTGCGCCCAGGACTGTGTTTTCACAGCAGCAGCCTCAGGCTAAGCCCCAGCCGCCGGCGAGACCCCCACCCCCCAGCATCGCTCCTCAGGCAGCCAGTGCTGCCGTTCCAGTCAGCGCCCCAATGGCTCCCGGCAGCTCTAATCCTCCACCTGTTGCACCCACTGGACCCTCACAGGCTCAAGGGCCACCATACCCCAGTTATCAAGGCTACCCAGGGTATTACCAGATGCCAATGGCCTATAATCCCTATGCATACGGGCAGTATAATATGCCCTACATGCCCTATCAAGCTCAGGGCCAGGCTGGATACCCTGGAGCCCCTGCAACACAGCAACCCTACCCCTACCCTCAACAACCACCCCAACAACAGCCCTATTACCCCCAACAGTAGAGCAACAACCTCCGCGACTACAGCCACACTCATTCCTGTAAACTAGCACTCTTCTTACTGCACTTATCTATTAACACTCCTGCACTCACACGCACTCGATCTCTACTTAACATCCCATTGGATCTGGGCGGGGTTTAAGACACAAGCCACACCTTTTATACAGTAGGGCGGAGTTTAGAATGTAAGCCACACCCTTTAAATAGGAGGGCAGTTTAGAATGCAAGCACTGCGTCTTCTATGGGAGGGTGGGGTTTAGATCTTAAACCACACCCCTTGTATAGGAGGGCGGAGTTTAGAATGCTAGCTCTGCCTCTTGTTTGGGGGCGGGTTTAGACAATAAATCACACCCCTTGTATAGAAAGGCGGGGTTTAGAATACGAACTCTGCCTATTGTATAAGAAGGAGGGGTTTATAACATAAACCACACCCCTTGTATAGGAGGGCGGAGTTTAGAATGCCAATTCTGCCTCTTGTTTGGGAGGTCGAGGTTTAGAACATATACCACACCTCTTTTATAGAAGGGCAGAGTTTAGAATACAAGCTCCGCCTCTTGTATGTAAGGGCGGGGTTTAGACTTATAACAAACCACACCTCTTTTATAGGATGGGGGAGATTAGAATATAAGGTCTGCCTCTTGTATGTAAGGGCGGGGTTTAGAACAAACCACACCTCTTTTAAAGGAGGGTGGAGATTAGAATACAAGCTCTGCCTCTTGTATGGAAGGGCGGGGTTTAGAACAAACCACACCTCTTTAATTGGAAGACGGGGTTTAAAAGTTCAGCCTCTTGTATGAGGGCCGGGTTTAGAACAAACCACACCTCTTGTATCGGGTGGTGTAGTTTAGAACATAAGCCACACCCCTTGTAAATCAGGGTGGGTTTCAGAATACAAGCTCTGCCTCTTGTATGGGAGGGCGGAGTTTGGAACATAAACCACAGCCCTTGTATAGGAGGGTGGGGTTAGAATTCAAGCTCTGCTTTTTGTAATGGGTGGGTGGAGATTAGAACACTTGCCCTTTGTGTAAATGGGCGGGGTTTGTAATAAGCTCCGCCCTAATATGAGTGCACTTTCAAGCTGAAGGTTTATATTGCAGGTGTGCTTGTGGAGGGAAGATCTGATCTTTGTTTGCTCTCTATCtgtttctgtctctctctttagCCCAAAGTGAAGCTGCTGGCTGCCTGCCGCTGCGTATATCTTATTTTTGTAATGAATACTGACATGTAATCTAATGCTAGAGCTGTTGATTTCTTACCTGATGATGATCATTTAAATGCTGGGAGAATTGCGGCGGTTGTGTCCTACTGTAACCCTCGTTGTACAATTATACCTCCTTCTGTTCGGTCTACAATCATCGCCTCGGGGAAAAGGAGCAGTTATAGAGTATGGATTTGTCACTAAAATAATTCCTTtttgtttctgttgttttcatgtgATTAAAATCTGTCTGATATTAA

Function

symbol description
pdcd6ip Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2678 Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

Ensembl:

ensembl_id ENSDARG00000025269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028362 True 4172 mRNA 0.50 18 42847306 42875185

Neighbor

gene id symbol gene type direction distance location
XLOC_014271 ubp1 coding upstream 5417 42806812 ~ 42841889 (+)
XLOC_014270 clasp2 coding upstream 45008 42693855 ~ 42802298 (+)
XLOC_014269 fbxl2 coding upstream 164359 42660158 ~ 42682947 (+)
XLOC_014268 crtap coding upstream 229583 42609132 ~ 42617723 (+)
XLOC_014266 NA coding upstream 244017 42560956 ~ 42603289 (+)
XLOC_014273 arpp21 coding downstream 11228 42886413 ~ 42917226 (+)
XLOC_014274 dre-mir-128-2 coding downstream 40234 42915419 ~ 42915541 (+)
XLOC_014275 fabp3 coding downstream 80095 42955280 ~ 42993306 (+)
XLOC_014276 snrnp40 coding downstream 129223 43004408 ~ 43016395 (+)
XLOC_014277 nkain1 coding downstream 142443 43017628 ~ 43035187 (+)
XLOC_014267 NA non-coding upstream 274179 42565358 ~ 42573127 (+)
XLOC_014265 NA non-coding upstream 300102 42518577 ~ 42547204 (+)
XLOC_014264 BX950855.1 non-coding upstream 331172 42505974 ~ 42516134 (+)
XLOC_014261 BX571688.1 non-coding upstream 509875 42337317 ~ 42337431 (+)
XLOC_014279 CU207343.4 non-coding downstream 202559 43077744 ~ 43077879 (+)
XLOC_014280 CU207343.3 non-coding downstream 205740 43080925 ~ 43081060 (+)
XLOC_014282 NA non-coding downstream 375368 43250553 ~ 43251194 (+)
XLOC_014291 NA non-coding downstream 671462 43546647 ~ 43549011 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_01422305_01429659 PDCD6IP, PDCD6IP.L coding CI01000054 null 1422305 ~ 1429659 (-)