RNA id: TCONS_00028362


Basic Information

Item Value
RNA id TCONS_00028362
length 4172
RNA type mRNA
GC content 0.50
exon number 18
gene id XLOC_014272
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42847306 ~ 42875185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACATCTGACGTGATGACGCACCCGAGAGAACCAGGAAGCGCTCAGCCTTTGTTTTTGTCCGTCTGCAGTGCTCTCATTTTCCACAAGAACCGTGTCGTTTCCGCGGGCCCAAATGGCGACGTTTATTTCTGTCCCGTTGAAGAAGTCCTCGGAGGTTGACCTTGTTAAACCGTTGTCAAAATTTGTCACGGCCACGTATCCTCCGGGTGAGGAGCAGGCGGAGTATTTGCGCGCCGTGGACGAGCTCAACAAGCTCCGGAAAAGTGCTCTGGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAGATCCTGCTGCGATATTATGATCAGCTCTGTGCAATCGAACCCAAATTTCCCTTTCCAGAGttatGTCTAACATTCACATGGAAAGATGCTTTTGATAAAGGATCTCTTTTTGGAGGCTCGGTCAAGCTTGcattgGCGAGTCTGGGCTATGAGAAGACGTGTGTGTTGTTTAATGTGGGCGCTCTGGCCAGTCAGATCGCTTCCGAGCAGAATCTCGACAATGATGAGGGACTCAAAACTGCCGCCAAGTTCTACCAGCTGGCGAGTGGAGCGTTTGCTCATATAAAGGACACCGTTCTGTCTGCCCTGAATCGAGAGCCCACCATGGACATCTCTCCCGAAACAGTGGGCACGCTCAGTCAGATCATGCTCAGTCAGGCTCAGGAGGTCTTCGTTCTCAAGGCCACTTCTGACAAGATGAAGGACGCCATTGTCGCTAAGCTTGCCAACCAGGCGGCAGATTATTACGGAGATGCTTTTAAGCAATGCCAATACAAAGAGAATCTGCCTAAGGACGTGCTTCCGGTCCTTGCCGCCAAGCACTGCATGATGCAGGCCACCGCCGAGATGCACCAGTCAGCCCTGGCCAATCAGAAGAAAAAGTTCGGGGAGGAGATCGCCCGGCTGCAGCACGCACAAGAGCTGGTGAAGACGGCGGCTTCTCGATACGACGAGTATGTTAATGTGAAGGATCTGTCAGATAAGATCAACAGAGCGCTTACAGCTGCAAAGAAAGACAATGACTTCATTTACCATGACCGCGTACCGGAGGTCAAAGACCTGGAGCACATCGGCAAAGCATCTCTGGTCAAAGCAACTGCAGTTCAGACACCACTCAGCCAGAAGTTCACAGaTCTGTTTGAGAAGATGGTGCCGATGGCGGTGCAGCAGTCTGTGAGTGCAGCCAATTCCAGAAAGGCAGAAACAGTCAACAGACTCATCGGCAGCATGAGAGAGGCAACCAATCTCTGCAACGGGGTGTTGGCATCCTTGAACCTGCCGGCTGCTCTTGAAGATCTGTCAGGAGACGCAGTTCCTCAATCCATCTTGGAGAAAAGCCGTGCTCTCATCCAGCAGGGCGGCCTTCAGAGCATCGAGCAGCTGATTAAAGATCTTCCAGAGCTCCTGCAGAGGAACCGAGAGATCCTGGATGAGTCCTTGAAGATGTTAGATGATGAGGAAGCGACAGACAATGAACTCCGAGGCAAATTCAATCAGCGCTGGAACAGAACTCCCTCTGGAGATCTGTATAAACCACTCAGAGCAGAGGGAAATAATTTTCGCAATATATTGGACAAGGCGGTGCAGGCCGATCAGGTGGTGAGAGAGCGTTACACGGCACATTGTGAGATGATTGCTTTGCTCTGCAAGCCAGAGAATGAGCTCAGTGCTGCCATACCGTCTGCCAACCCTGCCAAGACTCTGCAGGGCAGCGAGGTGGTAAATGTGTTGAGGTCTCAGCTGGCGCAACTGGATGAGGTCAAGAGGGAACGAGAAGTTCTGGAAGGAGAGGTGAAGTCAGTGACCTTTGACCTGACGGCAAAGTTTCTTACAGCACTGGCTCAAGATGGCGCCATCAATGAGGAGGTCATGACCAGCAGTGAGCTTGACGCTCGATACGGCTCACACAATCAACGCGTTCAACAGAACTTACGCAGACAGGAAGAGCTGCTGTCACAGATACAGGTTTCTCACCAGGAGTTTTCAGCACTAAAGCAGTCCAACTCTGAGGCTAATACCAGGGAGGACGTGTTGAAGAAACTGGCCTCCGCCCACGACAGCTACATCGAGATCAGCTCCAATATCAAAGAAGGCACTAAATTCTACAATGATCTGACAGAAATCCTGCTGAAGTTTCAAAATAAGTGCAGCGACATTGTCTTCGCTCGCAAAACTGAGAGAGATGAACTGCTCAAGGAGCTGCAGCAGAGTATTGCTCGAGAGCCAAGCGCTCCTTCATTCAGCGTCCCGTCATACCAGTCCAACACCCCTGCCCCTGCAGGAGGCCCGACCCCTGCGCCCAGGACTGTGTTTTCACAGCAGCAGCCTCAGGCTAAGCCCCAGCCGCCGGCGAGACCCCCACCCCCCAGCATCGCTCCTCAGGCAGCCAGTGCTGCCGTTCCAGTCAGCGCCCCAATGGCTCCCGGCAGCTCTAATCCTCCACCTGTTGCACCCACTGGACCCTCACAGGCTCAAGGGCCACCATACCCCAGTTATCAAGGCTACCCAGGGTATTACCAGATGCCAATGGCCTATAATCCCTATGCATACGGGCAGTATAATATGCCCTACATGCCCTATCAAGCTCAGGGCCAGGCTGGATACCCTGGAGCCCCTGCAACACAGCAACCCTACCCCTACCCTCAACAACCACCCCAACAACAGCCCTATTACCCCCAACAGTAGAGCAACAACCTCCGCGACTACAGCCACACTCATTCCTGTAAACTAGCACTCTTCTTACTGCACTTATCTATTAACACTCCTGCACTCACACGCACTCGATCTCTACTTAACATCCCATTGGATCTGGGCGGGGTTTAAGACACAAGCCACACCTTTTATACAGTAGGGCGGAGTTTAGAATGTAAGCCACACCCTTTAAATAGGAGGGCAGTTTAGAATGCAAGCACTGCGTCTTCTATGGGAGGGTGGGGTTTAGATCTTAAACCACACCCCTTGTATAGGAGGGCGGAGTTTAGAATGCTAGCTCTGCCTCTTGTTTGGGGGCGGGTTTAGACAATAAATCACACCCCTTGTATAGAAAGGCGGGGTTTAGAATACGAACTCTGCCTATTGTATAAGAAGGAGGGGTTTATAACATAAACCACACCCCTTGTATAGGAGGGCGGAGTTTAGAATGCCAATTCTGCCTCTTGTTTGGGAGGTCGAGGTTTAGAACATATACCACACCTCTTTTATAGAAGGGCAGAGTTTAGAATACAAGCTCCGCCTCTTGTATGTAAGGGCGGGGTTTAGACTTATAACAAACCACACCTCTTTTATAGGATGGGGGAGATTAGAATATAAGGTCTGCCTCTTGTATGTAAGGGCGGGGTTTAGAACAAACCACACCTCTTTTAAAGGAGGGTGGAGATTAGAATACAAGCTCTGCCTCTTGTATGGAAGGGCGGGGTTTAGAACAAACCACACCTCTTTAATTGGAAGACGGGGTTTAAAAGTTCAGCCTCTTGTATGAGGGCCGGGTTTAGAACAAACCACACCTCTTGTATCGGGTGGTGTAGTTTAGAACATAAGCCACACCCCTTGTAAATCAGGGTGGGTTTCAGAATACAAGCTCTGCCTCTTGTATGGGAGGGCGGAGTTTGGAACATAAACCACAGCCCTTGTATAGGAGGGTGGGGTTAGAATTCAAGCTCTGCTTTTTGTAATGGGTGGGTGGAGATTAGAACACTTGCCCTTTGTGTAAATGGGCGGGGTTTGTAATAAGCTCCGCCCTAATATGAGTGCACTTTCAAGCTGAAGGTTTATATTGCAGGTGTGCTTGTGGAGGGAAGATCTGATCTTTGTTTGCTCTCTATCtgtttctgtctctctctttagCCCAAAGTGAAGCTGCTGGCTGCCTGCCGCTGCGTATATCTTATTTTTGTAATGAATACTGACATGTAATCTAATGCTAGAGCTGTTGATTTCTTACCTGATGATGATCATTTAAATGCTGGGAGAATTGCGGCGGTTGTGTCCTACTGTAACCCTCGTTGTACAATTATACCTCCTTCTGTTCGGTCTACAATCATCGCCTCGGGGAAAAGGAGCAGTTATAGAGTATGGATTTGTCACTAAAATAATTCCTTtttgtttctgttgttttcatgtgATTAAAATCTGTCTGATATTAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2678 Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

Ensembl:

ensembl_id ENSDART00000135164

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028359 lncRNA upstream 48900 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 73727 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 82540 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 244017 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028372 lncRNA downstream 149502 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028377 lncRNA downstream 197508 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 197508 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 199458 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00030038 lncRNA downstream 375368 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028360 mRNA upstream 5417 42806812 ~ 42841889 (+) False XLOC_014271
TCONS_00028361 mRNA upstream 9816 42806814 ~ 42837490 (+) True XLOC_014271
TCONS_00028350 mRNA upstream 45008 42693855 ~ 42802298 (+) False XLOC_014270
TCONS_00028352 mRNA upstream 45008 42716542 ~ 42802298 (+) False XLOC_014270
TCONS_00028354 mRNA upstream 45008 42735211 ~ 42802298 (+) False XLOC_014270
TCONS_00028363 mRNA downstream 11228 42886413 ~ 42917226 (+) False XLOC_014273
TCONS_00028364 mRNA downstream 23054 42898239 ~ 42916773 (+) True XLOC_014273
TCONS_00028366 mRNA downstream 80095 42955280 ~ 42993234 (+) False XLOC_014275
TCONS_00028367 mRNA downstream 108428 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028368 mRNA downstream 129223 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028353 other upstream 112021 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 509875 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 658202 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 1888690 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 2502569 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028365 other downstream 40234 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 202559 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 205740 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 564216 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 790206 43665391 ~ 43665511 (+) True XLOC_014295

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01422305_01429659.mRNA True 1048 mRNA 0.51 8 CI01000054 1422305 ~ 1429659 (-)