RNA id: TCONS_00028364


Basic Information

Item Value
RNA id TCONS_00028364
length 1782
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_014273
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42886413 ~ 42917226 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAACAATAtgaggtgtgtgtctgtgtgtgtgtgttacagaatAAAGGGAAATTAATTCGAAGCGTGGCTGTATGTGACGAGTCTGTTTCCACAGATGAGAACAGCAAGGTAGGAATCACTGTAATCATGTGTCCCAGTCTAGAGTACACTGACTCCACCGGCATCGATCTGGAGGAGTTCTTGATCACTACTTTGAGGAGCAGTCCCAGGGACAGGCTGATGCTCTTAAAACTGGAGCAAGACATGACTGACTTCATGACCGACAACAGCTCCTATAAGAAGTTTCCTCAGATGTCCTCATATCACCGGATGCTCGTCCACCGGGTCGCTGCTTATTTCGGTCTGGAGCACAACGTGGACCACAGTGGCAAAGCAGTGATCATCAACAAAACCTGCAGCTCCAGGATACCAGAACATCGATTTGCTGAACATGTTCAAGAGGAGAAAATGGAAGAAAGAAGATTAATATTAAGGAGAGACGCTAGTCAGGAGAAAGAAGACGGTCAGCTGAGAGTTCCTTCACTTAAAGAGCAGATGAGGAGCCGGTCGATAGAGGAGCGCGAGGAGGAGTATCAGAGAGTCCGAGAGCGCATATTCTCACAGGACGCCACTTGCCTTTCGCAGAGTGTTTATATTGAGACCAGGGGCGAGCGGGACGGTTCGGGTCGTCTGTCCGGCAGCAGGCAGAGCAGTTTTGAGCTGGACTGTCACTGGAATAATGACCCTCGACCCTGGAGCAGCACAGATTCTGACAGCCCGACGTGGAGCTCCAAATCTGCACACACTCGCTCAGACAGCAGCTCCAAACTCTGCAAACCAGTGTCAGACTCAGCTCTGTCATACGCTccatccaacaacaacaacaacaatccgACTTATATTATCGTGCCTGCTGAATCATCAATACCTCCTGGGAGCATCTTGCTGAATCCGCATACAGGGCAGCCCTTTCTGAATCCTGATGGGACTCCTGCTGTTTATAATCCACCAGTGAGTCAGAAGTCCAGTATCCAGCTTAACCCAGTGCAGCCGCAAGCCCCGCCCCCTCCACCTCAGCAGCAGCCAATAGTAAGCCATGGTGTCCCACAGGTTCAATACTCGTCAGTGTCATACCTTCCACCTCAGCAAATGAACGCTTCTACCTCTCAGCAGCTCCCTGTAGAACAGACTAGTGAAGACATAAGCGCTAAGTTTGCTCACATGACTTTGAGTCACCAATCGTCAGCGGATCCTCCAGAAATGTCTTCATTCTACATGCAGGGAGCTCCGCCCACAAACACCTATGCTCCGCACCTCCACAGCTACGCTCCATCTCACCAATCAGAGAGTTACATGAGCCCTGGAATGACCCTGGCTCCTCCCACAGCCCCGCCCCCTCAGAATCAGCAGAGCAGCCAGGTTTCAGTTTACAGTTACCCGGTTCAGTGTGCCAGTGCGTCTCAACAGTACACAGCAGCTGCTTACGGCACACAGACAGGATATCAGCCTGTGGTTTCTAATCAACAAGGATGCCTGGGCATGATGGGAAGTCAGGTTTTACCACAAACACAGCAAGGCATTATGGGAGCTTACTCATCTGTAACCTCCTACCAGcagcagcatccgTCTGCAATGCTGGTGTCTGGTCAGGGCGGGCAGACGCAGTGTATGGTTCCCCCTGCTGGAGTTCAGCTGTACTGCAATTCTCCTCCTCCATCTCTCAGTATGATGGGAGTCTCCTTCCAGTCATCTAGCTGCAAAAATGGCTGTAACGTTAACCAGAACCAGTGCTGGTACTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-296 Predicted to enable nucleic acid binding activity. Is expressed in adaxial cell; myotome; and somite. Orthologous to human ARPP21 (cAMP regulated phosphoprotein 21).

Ensembl:

ensembl_id ENSDART00000051724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028359 lncRNA upstream 99833 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 124660 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 133473 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 294950 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028372 lncRNA downstream 107914 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028377 lncRNA downstream 155920 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 155920 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 157870 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00030038 lncRNA downstream 333780 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028362 mRNA upstream 23054 42847306 ~ 42875185 (+) True XLOC_014272
TCONS_00028360 mRNA upstream 56350 42806812 ~ 42841889 (+) False XLOC_014271
TCONS_00028361 mRNA upstream 60749 42806814 ~ 42837490 (+) True XLOC_014271
TCONS_00028358 mRNA upstream 107736 42770041 ~ 42790503 (+) False XLOC_014270
TCONS_00028355 mRNA upstream 124548 42754882 ~ 42773691 (+) False XLOC_014270
TCONS_00028366 mRNA downstream 38507 42955280 ~ 42993234 (+) False XLOC_014275
TCONS_00028367 mRNA downstream 66840 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028368 mRNA downstream 87635 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028369 mRNA downstream 100855 43017628 ~ 43035187 (+) False XLOC_014277
TCONS_00028370 mRNA downstream 100999 43017772 ~ 43031383 (+) False XLOC_014277
TCONS_00028353 other upstream 162954 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 560808 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 709135 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 1939623 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 2553502 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028379 other downstream 160971 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 164152 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 522628 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 748618 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 1092700 44009473 ~ 44032164 (+) False XLOC_014312

Expression Profile

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