RNA id: TCONS_00028370


Basic Information

Item Value
RNA id TCONS_00028370
length 1884
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_014277
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43017628 ~ 43035187 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgtgtatgtgtgtgtgtgtgtgagtgaacgCCTCGTGTTGTGGCGCGGGCGCGAGCGTCTCTATGCGGGTGCGCGCGCGGGCTGCAGACTCGCACGCGGGTGTCTGATTTCCACCCACAAACCCGCTCCGTGCACCCTCCCGGGGCCGATGTTGACAAAGAGAAGGATGGTGGCTCAAGCTACACCGCCGGTTTAGTAATTCAGCTCATAAAAACCAACACCGGAGCTCACGGTGTGGCAGATTGGCTAGGATTTGAGACCGCAGTTTGGACGCTTTGATTCGGACAATTCGGCGGAGGAGCTCCGGAATGACCAGCGGACATCCGCGAGCATCGACGCCGCGAAGCGTGCACTCGGCCCGGCGGGCGTCTTGATGTTTTGACTGCTGATCGTGAAGCGCGCTGGAGCTCACCGGGGACTCCGCTTTCTCCCGACGCCTCGCGGGGCCCAAGCCGTGCCTCAAGCGCGAGAGCATGGGTCGGTGCGACGGGAGGTGCACGCTGGTGGTCATCTGCTGCCTGCAGCTGGTCGCTGCATTACAGAGGCAGGTGTTTGACTTTATGGGATATCAGTGGGCTCCCATCCTGGCCAACTTCCTCCATATCATGGCCGTCATTCTGGGAGTGTTTGGAACTGTGCAAGTCCGCTCCAGATATCTGATACTGTATGCTGTGTGGCTTGTGGTCTGGGTGGGCTGGAACTCGTTCATCATCTGTTTTTATCTGGAAGTTGGTCACCTGTCTCAGGACAGGGATTTCCTGATGACATTTAACACTTCGCTTCATCGCTCCTGGTGGATGGAGAACGGGCCTGGTTGCCTAGTTACTCCAGTGCCTGATTCGCCATTGGCTCCTCAGGATCATCATGTGATCACTGTCAGCGGCTGCTTGCTGGACTACCAGTACATAGAGGTGGTCAGTTCAGCTCTGCAAGTGTTTCTCGCACTCTTTGGATTTGTTTATGCCTgctatgttagtaaatacagcCCGGATGACGAGGACAGCTTTGATTTCTTTGATGGATTGGGCTCGTATAATTACCAGCCTCCACAGAAGATCTCCCAATTACAGCTCCGGCCTCTCTATACGACTGGATAGAAACCGGAAGAAATTCCAGGTCCAGAAGAAAACACCTGCTAATTTCAGAGAGAGAGGAAGTCCTCTTCATTACGGGAAACACTCAACCAGCTTCAGTGTCTGTTTCCCGCAAACTTTTGTCTCCCTCTGttggagaaaacacacacacgcaccagcCAGAGTTACAGAGAGACGACCAGCAACCAGACCGACACTACTTAACAGACTTCAAGACAgtcaaaactgtgtgtgtgtgtgtgtgtgtgttcgttcaCGTGCGCACAAGCACATAGGCCTTTGTATTTGTTTGAGTATTGACACGCTGTGCGACCTTTGACCCAGGTAATCTTTGAACACAAATGCCGGAGTTTCTGGCAGGAGAGCGGCTGTTTATACTCCGATATAAGACACTATAATGTACCGTGGTAGATGAATGTGTTAGGTTGGCTTAGATGTGTATTTCGGGGGGAATGCTGTAGGACTATTTGTGCATGTAAATCTCACAATAGAGGAGTTGTGCCTCTGGGTTGGCCCTCATACGTCTGCGTGAATGCATGAATGTGCGTCGTGTCCGTGTATTTATGCACATAACGGGACTAGCCATATATGTTGATTGATTTGGACAGGAGATTAGAGTGAATGTATGGTAATGTACACTTCTTGTTTTGAGTGGCTGGAGGCGGCGTAAGGGCAAACCCGAAGGGTGGGACGGCATAATAAACTCTTTCTAGATTAATCTAATGTTTTGTTCACTTGTACATGAGATTGGTGGTCACATTTTATTCACACTAAAAAAACAAtgtcttt

Function

GO:

id name namespace
GO:0002028 regulation of sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1472 Predicted to be involved in regulation of sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human NKAIN1 (sodium/potassium transporting ATPase interacting 1).

Ensembl:

ensembl_id ENSDART00000015632

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028359 lncRNA upstream 219366 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 244193 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 253006 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 414483 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00028377 lncRNA downstream 41310 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00030037 lncRNA downstream 41310 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA downstream 43260 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00030038 lncRNA downstream 219170 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028400 lncRNA downstream 389382 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00028368 mRNA upstream 1377 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028367 mRNA upstream 24466 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028366 mRNA upstream 24538 42955280 ~ 42993234 (+) False XLOC_014275
TCONS_00028363 mRNA upstream 100546 42886413 ~ 42917226 (+) False XLOC_014273
TCONS_00028373 mRNA downstream 6274 43037657 ~ 43089455 (+) False XLOC_014278
TCONS_00028374 mRNA downstream 6274 43037657 ~ 43090728 (+) False XLOC_014278
TCONS_00028375 mRNA downstream 6275 43037658 ~ 43084065 (+) False XLOC_014278
TCONS_00028376 mRNA downstream 6282 43037665 ~ 43065877 (+) False XLOC_014278
TCONS_00028381 mRNA downstream 87631 43119014 ~ 43122329 (+) False XLOC_014281
TCONS_00028365 other upstream 102231 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 282487 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 680341 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 828668 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 2059156 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028379 other downstream 46361 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028380 other downstream 49542 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 408018 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 634008 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 978090 44009473 ~ 44032164 (+) False XLOC_014312

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU261235 True 607 lncRNA 0.58 3 CI01000054 1342086 ~ 1344574 (-)