RNA id: TCONS_00028374


Basic Information

Item Value
RNA id TCONS_00028374
length 1969
RNA type mRNA
GC content 0.54
exon number 13
gene id XLOC_014278
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43037657 ~ 43090728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGCATCGAGCCGCCATGTTGTTGGTGTGAAAGCCAGAGAGCTGCAGCGACCCGGGGCTGAAATCCGTCACCATCCGCATCCTCCACCTTCTCTGGTGGAATGAGCGTAGCGTGTGTGTTGAAGAGGAAAGCTGTGCTCTGGCAGGATTCGTTCAGCCCCCACCTGAGACTGCCTCCCCCTGACAGGCCATTACCCAGCATGCCTGTGGTGCTGAGTGCTGCGGGCCACACCCCTCAACCCGGCCCTTCTCCTCAGGCCCCTGCCCCGACACAGGGAGCCGGACGATCGCAAGATGACGCAATGGTGGATTATTTCTTTCAGCGGCAGCACGGGGACCAGCCCGGATACAACAACTGCAAACACCGCTGGCCGACCGGCGACAATATTCATGCAGACAACCAGGTACGATCCATGGATGAGCTAAATCATGACTTCCAGGCACTGGCACTGGAGGGTCGGGCCATGGGAGAGCAGCTCCTTACTGGGAAGAAGTTTTGGGAAACTGATGATTCAGGGAAAGATGGACCAAAAGGGATCTTTCTGGACCAGTGGAGAGACAGCGCTTGGGGAGCCtctgATCACTCAGTGTCTCAGCCAATCATGGTGCAGCGCCGACCGGGTCAGGGCTTCCACGGAGTGGGAGAGGCGGGATCTGTGCTGTCGCCGCGGTCCGAGAGCGGTGGGTTAGGGGTTTCCATGGTGGAGTATGTGCTCAGCTCCTCACCTGCTGAGAAGATGGACTCGTGTCTGCGCAAAGGAGCCTATGGTCCAAGAGATTCAGAGGCTGATGACCCTGAGAAAAGGGTGGAACAAAAACCCAAGACAACGTTTGACCCCGAACGAAAGGAACTGAAGGAGACCGAACCAGATGTTTTGGATAATCCTAATGGACTGCCCAATCAGAATGGACTTGATGTGGATGTTAAAGATTTTAGTCGGACCCCTGGAAATTGCCCTCCAACTGGTCAAGAGGTGGAGTTGGGAGGACCAGAGATGGTAGGAGGTGCAGGGCCGAAACCAGCCGAGGAGTTTTCAAATGTTGAAACccaaaatgtgaccctggaccccATGGAGTCAGTGTCTATGGAGACTTTGCAGTTCGAGTACCCTGGAGGACAGTTGCCGCTTGACTCCACAGCTGCTACCGTCGGCCTGTTTGACTACAACTCCCCTCAGCAGCTGTTCCAGAGACCCAATGCTCTGGCAGTCCAGCAGCTGACCGCAGCCCAGCAGCAGCAGTACGCGCTCGCCGCAGCCCAACAGCCACACATTGGTTTGGCTCCAGCTGCATTTGTACCGAATCCGTACATCATCAGCGCTGCTCCGCCCGGCACCGACCCGTATGCTGCAGGACTCGCTGCTGCCGCCACTCTAGGCCCAGCGGTGATGCCCCCTCAGTACTATGGAGTGACTCCATGGGGAGTGTATCCTGCCAACCTGTTCCAGCAGCAGGCTGCCACGCCATCCAACTCGGCCAACCAGCAGTCAGCAGCGCAGAACCAGCAGAACCAACAGCAGGTGATGCGTGCAGGTGGAAACCAGCGACCTCTCACTCCAAGTCAAGGACAGCAGGGTCAGCAGACGGAGCAGCTCGTAGCGGCAGCAGCTGTGAACTCGGCATTGGCTTTTGGGCAGGGTCTGGCAGCAGGTGTACCAGGTTATCCAGTGTTGGCTCCTGCTGCATATTATGACCAGATTTGCCATTCTTTTGTCTACTTGTAAGTGTAACATAATGGCCATTTGGTTTTTTGATTTGGAACACTCTCCGGTGTATATTTAAACAGCCTTGTGTATATTTCCTATTCTCTTTATGCAGGCACACTTGTAACCATAATGTGTATAGGTAACAGATGCTGTGTGTGCTTTCTGCCTGGGCAACTATTTTTTGTAACTCCAGTTGTAGATTGTCTCTAAACAATGTGTGATCTTTATtttgaaacaaaacaatgaaaacatttcaaaatttC

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0035196 production of miRNAs involved in gene silencing by miRNA biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2074 Enables mRNA binding activity. Involved in pole plasm mRNA localization. Predicted to be active in cytosol. Is expressed in ovary. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Orthologous to human PUM1 (pumilio RNA binding family member 1).

Ensembl:

ensembl_id ENSDART00000184771

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028372 lncRNA upstream 10174 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028359 lncRNA upstream 239251 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 264078 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 272891 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00030036 lncRNA upstream 464530 42565358 ~ 42573127 (+) True XLOC_014267
TCONS_00030038 lncRNA downstream 159825 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028400 lncRNA downstream 330037 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00030040 lncRNA downstream 455919 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA downstream 455919 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028407 lncRNA downstream 502111 43592839 ~ 43599344 (+) True XLOC_014293
TCONS_00028369 mRNA upstream 2470 43017628 ~ 43035187 (+) False XLOC_014277
TCONS_00028370 mRNA upstream 6274 43017772 ~ 43031383 (+) False XLOC_014277
TCONS_00028371 mRNA upstream 10825 43017931 ~ 43026832 (+) False XLOC_014277
TCONS_00028368 mRNA upstream 21262 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028367 mRNA upstream 44351 42983613 ~ 42993306 (+) True XLOC_014275
TCONS_00028381 mRNA downstream 28286 43119014 ~ 43122329 (+) False XLOC_014281
TCONS_00028382 mRNA downstream 28970 43119698 ~ 43137501 (+) False XLOC_014281
TCONS_00028384 mRNA downstream 28970 43119698 ~ 43137740 (+) False XLOC_014281
TCONS_00028383 mRNA downstream 28970 43119698 ~ 43137740 (+) False XLOC_014281
TCONS_00028385 mRNA downstream 32603 43123331 ~ 43134843 (+) True XLOC_014281
TCONS_00028365 other upstream 122116 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 302372 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 700226 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 848553 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 2079041 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028401 other downstream 348673 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 574663 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 918745 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 2418137 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 3152892 46243620 ~ 46280931 (+) False XLOC_014327

Expression Profile

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