XLOC_014267


Basic Information

Item Value
gene id XLOC_014267
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42565358 ~ 42573127 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030036
GTTCACTCAATGAGGCCAGACCGACTTACTAGGCTACATGTATCATTTTACCAATATTTCCCTTCATATATGTACAGCAGACAAATAATTTAGAAAATTATTTTCcataattcaccaaaatgtaatTTTCTCTACAGGTTAAATCACATAGCCAGAGACTTACTACAGATAAGATTTTTACCAATATCTCCCTTCATTTGTGTAGTGTCTGGCCTCATGTGCTACAGCCTTTTGAAtgagaaaattacatttaattgtgCAATTGGTGAATTACTGTAAATGTGTTTCAGAAAATATGTCCACACATGTATGAAGGGGGATATTGGTAAAAAGGATAGTCAGAAAACCTGAaagtactattttttttcttaacataTTAAGATAATGTCAATATGTCTTAAGTTAGTTTTCTTTATGTAAAAACTGTACATGTAATGCATGTATAACGTATAGCTACTCAAGCGTAGTGCATCACTGAAGTGTCAATGAGCCCTTCAACTAAACTTTTCATAATCTCACAATTTATTTTGTTCCATgattattatatttctattatcTACCATCAGTTTCGACAGCCGCACACGTTTTAAGACACAATACAGAATTTATAGACGATCCCCCTGACAGCTCGTCAGTAAACATGCAGTTACAAAACGCATGTGCTGTTTTAAATGGAGATTTCTTGTAAATCTATAACACGTGTAAGCTATTTGTAAACTGTGTAGATATTtttgtaacgacagaacttgcgCGGATAACGAATCAGGTCAATATACAAcctaaaactaactttaccgaGCTCAGCTAACCAGCTAATATTTATATCTGATATGTCGTTGCCTGTGTTGTCGGAATAACAGGACGAAACCTTAACTGTTACTACATCTTGTGTATACCAATGTGTATagaatatactatagtaaagacTCTTTTTTTATAAAACGCAGCGTCCCGTGTCTTCACTGTGCTATTTATACATCCCGGACTAATACATGCCAATTTCCCAGTATAACGTTAAAATGGCATTAAATTAGTATTTCAGCACATACGTTATAAGTGCATGAGTAAGCAATGTAGATGATAcggataaaac

Function

GO:

id name namespace
GO:0010882 regulation of cardiac muscle contraction by calcium ion signaling biological_process
GO:0006941 striated muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030036 True 1093 lncRNA 0.34 2 42565358 42573127

Neighbor

gene id symbol gene type direction distance location
XLOC_014265 NA coding upstream 18154 42518577 ~ 42547204 (+)
XLOC_014264 BX950855.1 coding upstream 49224 42505974 ~ 42516134 (+)
XLOC_014263 si:dkey-166k12.1 coding upstream 80294 42469058 ~ 42485064 (+)
XLOC_014262 pogza coding upstream 109357 42432625 ~ 42456001 (+)
XLOC_014261 BX571688.1 coding upstream 227927 42337317 ~ 42337431 (+)
XLOC_014268 crtap coding downstream 36005 42609132 ~ 42617723 (+)
XLOC_014269 fbxl2 coding downstream 87031 42660158 ~ 42682947 (+)
XLOC_014270 clasp2 coding downstream 120728 42693855 ~ 42802298 (+)
XLOC_014271 ubp1 coding downstream 233685 42806812 ~ 42841889 (+)
XLOC_014272 pdcd6ip coding downstream 274179 42847306 ~ 42875185 (+)
XLOC_014257 CU896644.3 non-coding upstream 376254 42188990 ~ 42189104 (+)
XLOC_014255 NA non-coding upstream 424704 42127923 ~ 42140654 (+)
XLOC_014274 dre-mir-128-2 non-coding downstream 342292 42915419 ~ 42915541 (+)
XLOC_014279 CU207343.4 non-coding downstream 504617 43077744 ~ 43077879 (+)
XLOC_014280 CU207343.3 non-coding downstream 507798 43080925 ~ 43081060 (+)
XLOC_014282 NA non-coding downstream 677426 43250553 ~ 43251194 (+)
XLOC_014291 NA non-coding downstream 973520 43546647 ~ 43549011 (+)

Expression


Co-expression Network