RNA id: TCONS_00028381


Basic Information

Item Value
RNA id TCONS_00028381
length 1745
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_014281
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43119014 ~ 43137740 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCTCTTTCTGTTACCTGGCAAAGGGGAGCAGCAGCTGAGGAGTGATCTCTCAATCTTGAAACTTATCAATCATGGGAAAGGAAAAGACCCACATTAACATCGTGGTTATTGGCCACGTCGACTCCGGAAAGTCCACCACCACCGGCCATCTGATCTACAAATGCGGTGGAATCGACAAGAGAACCATCGAGAAGTTCGAGAAGGAAGCCGCTGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGTTGGACAAACTGAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTCTGGAAATTCGAGACCAGCAAATACTACGTCACCATCATTGATGCCCCTGGACACAGAGACTTCATCAAGAACATGATCACTGGTACTTCTCAGGCTGACTGTGCTGTGCTGATTGTTGCTGGTGGTGTTGGTGAGTTTGAGGCTGGTATCTCCAAGAACGGACAGACCCGTGAGCACGCCCTCCTGGCTTTCACCCTGGGAGTGAAACAGCTGATCGTTGGAGTCAACAAGATGGACTCCACTGAGCCCCCTTACAGCCAGGCTCGTTTTGAGGAAATCACCAAGGAAGTCAGCGCATACATCAAGAAGATCGGCTACAACCCTGCCAGTGTTGCCTTCGTCCCAATTTCAGGATGGCACGGTGACAACATGCTGGAGGCCAGCTCAAACATGGGCTGGTTCAAGGGATGGAAGATTGAGCGCAAGGAGGGTAATGCTAGCGGTACTACTCTTCTTGATGCCCTTGATGCCATTCTGCCCCCTAGCCGTCCCACCGACAAGCCCCTCCGTCTGCCACTTCAGGATGTGTACAAAATTGGAGGTATTGGAACTGTACCTGTGGGTCGTGTGGAGACTGGTGTCCTCAAGCCTGGTATGGTTGTGACCTTCGCCCCTGCCAATGTAACCACTGAGGTCAAGTCTGTTGAGATGCACCACGAGTCTCTGACTGAGGCCACTCCTGGTGACAACGTTGGCTTCAACGTTAAGAACGTGTCTGTCAAGGACATCCGTCGTGGTAATGTGGCTGGAGACAGCAAGAACGACCCACCCATGGAGGCTGCCAACTTCAACGCTCAGGTCATCATCCTGAACCACCCTGGTCAGATCTCTCAGGGTTACGCCCCAGTGCTGGATTGCCACACTGCTCACATCGCCTGCAAGTTTGCTGAGCTCAAGGAGAAGATCGACCGTCGTTCTGGCAAGAAGCTTGAAGACAACCCCAAGGCTCTCAAATCCGGAGATGCTGCCATTGTCGAGATGGTCCCTGGCAAGCCCATGTGTGTGGAGAGCTTCTCTACCTACCCTCCTCTTGGTCGCTTTGCTGTGCGTGACATGAGGCAGACCGTTGCTGTCGGCGTCATCAAGAGCGTTGAGAAGAAAATCGGTGGTGCTGGCAAGGTCACAAAGTCTGCACAGAAGGCTGCCAAGACCAAGTGAATTTCCCTCAATCACACCGTTCCAAAGGTTGCGGCGTGTTCTTCCCAACCTCTTGGAATTTCTCTAAACCTGGGCACTCTACTTAAGGACTGGATAATGCTGATTAAAACCCATCGGAAAAATTTTCGCAGGAAAGGAAAACAACTTGGATTTAAGTGTGGCTCCATTTATTGACTGATAGTGCCTCTTTCAGTTATTAAATTTGTGTTTTGATGGTTTAGAACTGCACCTGTTGCCACAGTACAATTTGGAAACGCTGatgaataaactaataaaggTATT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-52 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to be located in cytoplasm. Is expressed in several structures, including integument; musculature system; nervous system; pleuroperitoneal region; and skeletal system.

Ensembl:

ensembl_id ENSDART00000023156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030037 lncRNA upstream 39176 43072693 ~ 43079838 (+) False XLOC_014278
TCONS_00028378 lncRNA upstream 39176 43074643 ~ 43079838 (+) True XLOC_014278
TCONS_00028377 lncRNA upstream 39336 43072693 ~ 43079678 (+) False XLOC_014278
TCONS_00028372 lncRNA upstream 91531 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028359 lncRNA upstream 320608 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00030038 lncRNA downstream 128224 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028400 lncRNA downstream 298436 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00030040 lncRNA downstream 424318 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA downstream 424318 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028407 lncRNA downstream 470510 43592839 ~ 43599344 (+) True XLOC_014293
TCONS_00028374 mRNA upstream 28286 43037657 ~ 43090728 (+) False XLOC_014278
TCONS_00028373 mRNA upstream 29559 43037657 ~ 43089455 (+) False XLOC_014278
TCONS_00028375 mRNA upstream 34949 43037658 ~ 43084065 (+) False XLOC_014278
TCONS_00028376 mRNA upstream 53137 43037665 ~ 43065877 (+) False XLOC_014278
TCONS_00028369 mRNA upstream 83827 43017628 ~ 43035187 (+) False XLOC_014277
TCONS_00028385 mRNA downstream 1002 43123331 ~ 43134843 (+) True XLOC_014281
TCONS_00028386 mRNA downstream 134657 43256986 ~ 43272332 (+) True XLOC_014283
TCONS_00028387 mRNA downstream 175217 43297546 ~ 43309596 (+) True XLOC_014284
TCONS_00028388 mRNA downstream 192371 43314700 ~ 43338280 (+) False XLOC_014285
TCONS_00028389 mRNA downstream 192409 43314738 ~ 43331619 (+) True XLOC_014285
TCONS_00028380 other upstream 37954 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 41135 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 203473 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 383729 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 781583 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028401 other downstream 317072 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 543062 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 887144 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 2386536 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 3121291 46243620 ~ 46280931 (+) False XLOC_014327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU261213 False 1662 TUCP 0.51 8 CI01000054 1226423 ~ 1230135 (-)
eurasian perch (Perca fluviatilis) TU261213 True 979 lncRNA 0.55 1 NC_053130.1 7122200 ~ 7123178 (+)
tiger barb (Puntius tetrazona) TU261213 False 2988 TUCP 0.44 7 NW_025047824.1 1761816 ~ 1771544 (+)