XLOC_014284 (laptm5)


Basic Information

Item Value
gene id XLOC_014284
gene name laptm5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43297546 ~ 43309596 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028387
GACTCTATATGTGACTCTTTCAGGTTGTTTGTCTCATCGTGGAAAGAAAAAAGACGAAGAGAAAAGATGTCTGGAGGACGTACACTCTGCTGTCATGTCAGCACGGCGACCCTCGTATTCGCCTTTTATTATCTGATTGTGAACACGTTGAAGCTGGTGGGCATGGTCCTGTCAGTCTGCAAAGGGAAAGAGGCTTTTCCTGTGCCCTACAGTGAATACAAGGCTCCCAGAAGTCAGCGTATCTTTGACATCAGCACTAATATTCTGATGCTGATTTCCATGTCCATCGCTGCTTTTCTGGCTTTTTTCTCCAAGCGCAAGGGCCCGATGTTTGTGCTGCCGTTCGTGATGATGATGTTTGTGGAGCTGGGCATGagttttctgtctgtctttgaTGGGGTCTGGAGTCTGCCAGGGACCCCCAACTATAGAGACTTGCTGCAGGCTGCAaagtcTCAGATGGGAGTGCCGAGGCTGGATGAGGAGTTCATTGGTCAGCTCACCATGTGGTACAGCGTTCTCTTCATGACGGACGTATTGCTCAAGGTGTATGCCCTTCAAGTGTCAATGAGGTATTTCTACATGCTGAAGGCAGAACGGACCACTGCCGTCAATGTTGACACTGGAAACACTGTGACAGTGAAGCTGCCGTCTTATGCCGACGCTCTCAAGATGAAAGCAGAAGACACTCCTCCTACTTATCAAGAGCCTTAAAATGTGCATTTCCAGCAACCTTTCCGCCCACCttacaagtttaaaacacaaTTAGCTCAAATAACTCACACGCATTGCAACAACCGAACGCAGCATTTAAACCTGCATGCCTGTGCTTGTATCTTTGcttcaatacaaataaaattaataaattaaagctg

Function

symbol description
laptm5 Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101785

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028387 True 875 mRNA 0.47 7 43297546 43309596

Neighbor

gene id symbol gene type direction distance location
XLOC_014283 DGKD coding upstream 25214 43256986 ~ 43272332 (+)
XLOC_014282 NA coding upstream 46352 43250553 ~ 43251194 (+)
XLOC_014281 eef1a1l1 coding upstream 159806 43119014 ~ 43137740 (+)
XLOC_014278 pum1 coding upstream 206818 43037657 ~ 43090728 (+)
XLOC_014285 matn1 coding downstream 5104 43314700 ~ 43338280 (+)
XLOC_014286 sesn2 coding downstream 31519 43341115 ~ 43357457 (+)
XLOC_014287 yrk coding downstream 49479 43359075 ~ 43432415 (+)
XLOC_014288 ahdc1 coding downstream 129805 43439401 ~ 43500299 (+)
XLOC_014289 BX649384.3 coding downstream 194884 43504480 ~ 43515396 (+)
XLOC_014280 CU207343.3 non-coding upstream 216486 43080925 ~ 43081060 (+)
XLOC_014279 CU207343.4 non-coding upstream 219667 43077744 ~ 43077879 (+)
XLOC_014274 dre-mir-128-2 non-coding upstream 382005 42915419 ~ 42915541 (+)
XLOC_014267 NA non-coding upstream 724419 42565358 ~ 42573127 (+)
XLOC_014291 NA non-coding downstream 237051 43546647 ~ 43549011 (+)
XLOC_014295 CR356238.1 non-coding downstream 355795 43665391 ~ 43665511 (+)
XLOC_014300 NA non-coding downstream 477407 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding downstream 477546 43787142 ~ 43790716 (+)
XLOC_014302 NA non-coding downstream 491236 43800832 ~ 43804410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_00992036_01004247 NA coding CI01000054 null 992036 ~ 1004392 (+)