RNA id: TCONS_00028377


Basic Information

Item Value
RNA id TCONS_00028377
length 721
lncRNA type retained_intron
GC content 0.54
exon number 4
gene id XLOC_014278
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43037657 ~ 43090728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAACTCATGGATCCTCAAGCAGTCTTAATCTTGGTGGACTGACCAATGGCAGTGGGCGCTTCATCTCAGCAGCTCCTGGAGCGGAGGCGAAGTACCGCAGCGCCACCACCGGCTCGTCTCTCTTCAGTCCCAGCAGTCAGCTCTTCCCCTCGTCACGGCTGCGCTACGGGATGTCTGACGTGATGCCGTCGGGACGCAGCCGTCTGCTGGAGGACTTCAGAAACAACCGCTACCCCAACCTGCAGCTGAGAGAGATCGCAGGACACGTCATGGAGTTCTCTCAGGACCAGCACGGCTCCAGGTTTATTCAGCTGAAATTGGAGAGAGCAAGTCCTGCAGAGCGTCAGCTGGTCTTCAATGAGATCCTGCAGGCCGCCTACCAGCTCATGGTTGATGTGTTTGGAAATTATGTCATCCAGAAGTTCTTTGAGTTTGGCAGTCTGGACCAGAAGCTGGCGCTGGCCGAGCGGATTCGTGGTCATGTGTTATCCCTGGCGCTGCAGATGTACGGCTGCAGAGTCATTCAGAAAGCCCTGGAGTTCATCCCCTCCGACCAGCAAGTCATTGTAGGTTTATAAAGCCTGTGTGTTCATGTTATCATCATTAACAAGTCGCTTCGCAGAGCTCATGATCTGAATGTTTGTGGTTTGCAGAATGAGATGGTTCGGGAGCTCGACGGACACGTGTTAAAGTGTGTGAAGGATCAAAACGGCAATCAT

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0035196 production of miRNAs involved in gene silencing by miRNA biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2074 Enables mRNA binding activity. Involved in pole plasm mRNA localization. Predicted to be active in cytosol. Is expressed in ovary. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Orthologous to human PUM1 (pumilio RNA binding family member 1).

Ensembl:

ensembl_id ENSDART00000157961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028372 lncRNA upstream 45210 43024687 ~ 43027483 (+) True XLOC_014277
TCONS_00028359 lncRNA upstream 274287 42793365 ~ 42798406 (+) True XLOC_014270
TCONS_00028357 lncRNA upstream 299114 42766707 ~ 42773579 (+) False XLOC_014270
TCONS_00028356 lncRNA upstream 307927 42761946 ~ 42764766 (+) False XLOC_014270
TCONS_00028347 lncRNA upstream 469404 42560956 ~ 42603289 (+) True XLOC_014266
TCONS_00030038 lncRNA downstream 170875 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028400 lncRNA downstream 341087 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00030040 lncRNA downstream 466969 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA downstream 466969 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028407 lncRNA downstream 513161 43592839 ~ 43599344 (+) True XLOC_014293
TCONS_00028376 mRNA upstream 6816 43037665 ~ 43065877 (+) False XLOC_014278
TCONS_00028369 mRNA upstream 37506 43017628 ~ 43035187 (+) False XLOC_014277
TCONS_00028370 mRNA upstream 41310 43017772 ~ 43031383 (+) False XLOC_014277
TCONS_00028371 mRNA upstream 45861 43017931 ~ 43026832 (+) False XLOC_014277
TCONS_00028368 mRNA upstream 56298 43004408 ~ 43016395 (+) True XLOC_014276
TCONS_00028381 mRNA downstream 39336 43119014 ~ 43122329 (+) False XLOC_014281
TCONS_00028382 mRNA downstream 40020 43119698 ~ 43137501 (+) False XLOC_014281
TCONS_00028384 mRNA downstream 40020 43119698 ~ 43137740 (+) False XLOC_014281
TCONS_00028383 mRNA downstream 40020 43119698 ~ 43137740 (+) False XLOC_014281
TCONS_00028385 mRNA downstream 43653 43123331 ~ 43134843 (+) True XLOC_014281
TCONS_00028365 other upstream 157152 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028353 other upstream 337408 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028342 other upstream 735262 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028333 other upstream 883589 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028303 other upstream 2114077 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028380 other downstream 1247 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028401 other downstream 359723 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028411 other downstream 585713 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028433 other downstream 929795 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 2429187 45508865 ~ 45508981 (+) True XLOC_014316

Expression Profile

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