XLOC_014231 (fam133b)


Basic Information

Item Value
gene id XLOC_014231
gene name fam133b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40335271 ~ 40347943 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028290
GGCGAGTTGATGTCGGCAGCGGCTGTGGACAAAAACATGgaatatggagacagatgaatataTGTAACGACAGATGCGGGACATTAAAACAGAAAGTGAGCCCGGCTAAGACAACAACACACTACTCTGACCATctcctagtggtgGCATACTTGAACCCAATAGCTGCTGCCAGAGCCAGAGGACCTGCACCCACCTCCGGCACCACCATTCAGGATTATCTCAGCAGACCACGACCATCATGGGAGGAGGTGAAAGAACAGTTGGAAAAGAAAAGGAAAGGCTCCAGAGCCCTGGCTGATTTTGAGGACAAGATGAACGCGCGATGGAAGAAGGAACTGGAGAAAAACAGGGAGAAGGTGCTTGGGGGAGGTgataagaaagaaaaagaaaaggagaaagACAAGGAGAAGGAAAAGAAGGAGaaaaagaagaaagagaagaagaagTCCAGTAGGCATTCctcatcttcctcctcctcatcatcgaGTTCTGATTCCTCCTCCAGTTCCTCCTCAGATGCTGAAGACGATGATGAGAAGAAAAatctaaaaaagaagaaaaagagaaaacgATCCTCAACCCGGAAAGCGTCTGATGAGACTGACTCCGAGTCTGAGACTGATAGCAGGgaGTCATTcaagaaaaaaaggaagaaaacagatggagaGAAAGATA
>TCONS_00028291
GTAGTTTGCCAGCAAATCCGATAAGCTGctgcagcgccctctagtgttcaTACTGAGCGTGTGGCGCCGCTGTGGAACCGCTAGATGGCGATTCTTCAGAAACACTCACTGCACACTGGAGCCTCCGCCAGCACCACAGACATGTAAACAAAAGGCAGATTTCATAGGTTTTAGCCTACGGGTTTTaggcaaaatctgcagaaatggGCAAGCGAGATAACAGAGTGGCATACTTGAACCCAATAGCTGCTGCCAGAGCCAGAGGACCTGCACCCACCTCCGGCACCACCATTCAGGATTATCTCAGCAGACCACGACCATCATGGGAGGAGGTGAAAGAACAGTTGGAAAAGAAAAGGAAAGGCTCCAGAGCCCTGGCTGATTTTGAGGACAAGATGAACGCGCGATGGAAGAAGGAACTGGAGAAAAACAGGGAGAAGGTGCTTGGGGGAGGTgataagaaagaaaaagaaaaggagaaagACAAGGAGAAGGAAAAGAAGGAGaaaaagaagaaagagaagaagaagTCCAGTAGGCATTCctcatcttcctcctcctcatcatcgaGTTCTGATTCCTCCTCCAGTTCCTCCTCAGATGCTGAAGACGATGATGAGAAGAAAAatctaaaaaagaagaaaaagagaaaacgATCCTCAACCCGGAAAGCGTCTGATGAGACTGACTCCGAGTCTGAGACTGATAGCAGGgaGTCATTcaagaaaaaaaggaagaaaacagatggagaGAAAGATAAGGACGAAAAGGACTCTCGAAAGAAGAGGAAAGCTGAAAGAAGTCAGTCCGAGTCTTCTGACGAGTCTGATGTAGACAAAGACgctgaCTCCAAAAAGAAGAAACATAGTAGTGAAGAGAAGGAGAAAATTACAGATAAgtctaaaaagaaaaagaaaaagaagaagcatAAGAAACACAgcaaaaagaaaaagaggaagacctCCAGCTCGGAGTTGGACTGAAGGTGCTAGCGGCGGCTGGATTTGTGAATGGTAACGGAAAAGACAGAGCTCTTGACAGACAGTGGAGAAATAAATCCATCAGAAAGCTGTCCAAGTGACTCTTAAAAGTGGGTGCTCTTTAGCATCGTGCAGCTGTAGTGGAGACTGGGATGAGAGGATCGTGGCGGGGGTGTTGAACAGGGCGTGGGGTTCATTACGTcaggtttgtgtttgttttttaagcagATGATTCTCAGTCCAAATAAAGACCATTTACACATCA
>TCONS_00028292
CCGCTAGATGGCGATTCTTCAGAAACACTCACTGCACACTGGAGCCTCCGCCAGCACCACAGACATGTAAACAAAAGGCAGATTTCATAGGTTTTAGCCTACGGGTTTTaggcaaaatctgcagaaatggGCAAGCGAGATAACAGAGTGGCATACTTGAACCCAATAGCTGCTGCCAGAGCCAGAGGACCTGCACCCACCTCCGGCACCACCATTCAGGATTATCTCAGCAGACCACGACCATCATGGGAGGAGGTGAAAGAACAGTTGGAAAAGAAAAGGAAAGGCTCCAGAGCCCTGGCTGATTTTGAGGACAAGATGAACGCGCGATGGAAGAAGGAACTGGAGAAAAACAGGGAGAAGGTGCTTGGGGGAGGTgataagaaagaaaaagaaaaggagaaagACAAGGAGAAGGAAAAGAAGGAGaaaaagaagaaagagaagaagaagTCCAGTAGGCATTCctcatcttcctcctcctcatcatcgaGTTCTGATTCCTCCTCCAGTTCCTCCTCAGATGCTGAAGACGATGATGAGAAGAAAAatctaaaaaagaagaaaaagagaaaacgATCCTCAACCCGGAAAGCGTCTGATGAGACTGACTCCGAGTCTGAGACTGATAGCAGGGACGAAAAGGACTCTCGAAAGAAGAGGAAAGCTGAAAGAAGTCAGTCCGAGTCTTCTGACGAGTCTGATGTAGACAAAGACgctgaCTCCAAAAAGAAGAAACATAGTAGTGAAGAGAAGGAGAAAATTACAGTAAGTC
>TCONS_00028293
AGAAACACTCACTGCACACTGGAGCCTCCGCCAGCACCACAGACATGTAAACAAAAGGCAGATTTCATAGGTTTTAGCCTACGGGTTTTaggcaaaatctgcagaaatggGCAAGCGAGATAACAGAGTGGCATACTTGAACCCAATAGCTGCTGCCAGAGCCAGAGGACCTGCACCCACCTCCGGCACCACCATTCAGGATTATCTCAGCAGACCACGACCATCATGGGAGGAGGTGAAAGAACAGTTGGAAAAGAAAAGGAAAGGCTCCAGAGCCCTGGCTGATTTTGAGGACAAGATGAACGCGCGATGGAAGAAGGAACTGGAGAAAAACAGGGAGAAGGTGCTTGGGGGAGGTgataagaaagaaaaagaaaaggagaaagACAAGGAGAAGGAAAAGAAGGAGaaaaagaagaaagagaagaagaagTCCAGTAGGTTCCTCCTCAGATGCTGAAGACGATGATGAGAAGAAAAatctaaaaaagaagaaaaagagaaaacgATCCTCAACCCGGAAAGCGTCTGATGAGACTGACTCCGAGTCTGAGACTGATAGCAGGgaGTCATTcaagaaaaaaaggaagaa
>TCONS_00028294
ACTGCACACTGGAGCCTCCGCCAGCACCACAGACATGTAAACAAAAGGCAGATTTCATAGGTTTTAGCCTACGGGTTTTaggcaaaatctgcagaaatggGCAAGCGAGATAACAGAGTGGCATACTTGAACCCAATAGCTGCTGCCAGAGCCAGAGGACCTGCACCCACCTCCGGCACCACCATTCAGGATTATCTCAGCAGACCACGACCATCATGGGAGGAGGTGAAAGAACAGTTGGAAAAGAAAAGGAAAGGCTCCAGAGCCCTGGCTGATTTTGAGGACAAGATGAACGCGCGATGGAAGAAGGAACTGGAGAAAAACAGGGAGAAGGTGCTTGGGGGAGGTgataagaaagaaaaagaaaaggagaaagACAAGGAGAAGGAAAAGAAGGAGGTATGATGTGTTACAGTCATTTGTAATACCACTAGAGATCGATTCTGATGTTCATGGGTAGCAACAGGTGTTGAACGTGGGATTCAAATCATGAGTTATAAATGGAAAAAATGATGATCAGAATGTTAAATTTGTAATTcagactatttttatttttttttatcatacatGTACTAGTTTATATAAGGGCAAATTTAAtaagaattattaattaaaataagaatttataaaaataagaaagTAAGACATTGAAAGGCTATTTAAGGATAACAATACAGCAGCAGCAGaaaaaactacaaaa

Function

symbol description
fam133b Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-229 Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B).

Ensembl:

ensembl_id ENSDARG00000013863

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028290 False 678 mRNA 0.46 8 40335271 40344757
TCONS_00028291 False 1245 mRNA 0.46 11 40337457 40347943
TCONS_00028292 False 775 mRNA 0.46 9 40337534 40346145
TCONS_00028293 False 592 nonsense_mediated_decay 0.46 8 40337554 40344737
TCONS_00028294 True 700 lncRNA 0.40 4 40337564 40340629

Neighbor

gene id symbol gene type direction distance location
XLOC_014230 NA coding upstream 2177 40328712 ~ 40333094 (+)
XLOC_014229 cdk6 coding upstream 6722 40248697 ~ 40328549 (+)
XLOC_014227 BX510986.1 coding upstream 123079 40171960 ~ 40212192 (+)
XLOC_014228 rbm48 coding upstream 152629 40177246 ~ 40182642 (+)
XLOC_014226 si:ch211-173p18.3 coding upstream 169472 40115977 ~ 40165799 (+)
XLOC_014232 hepacam2 coding downstream 2525 40350468 ~ 40374428 (+)
XLOC_014233 vps50 coding downstream 31828 40379771 ~ 40686675 (+)
XLOC_014234 NA coding downstream 344485 40692428 ~ 40736984 (+)
XLOC_014235 si:ch211-120e1.1 coding downstream 484550 40832493 ~ 40834956 (+)
XLOC_014236 gngt1 coding downstream 508591 40856534 ~ 40859468 (+)
XLOC_014224 NA non-coding upstream 268680 40057836 ~ 40066591 (+)
XLOC_014222 BX957260.1 non-coding upstream 365813 39927406 ~ 39969458 (+)
XLOC_014221 BX957260.2 non-coding upstream 460324 39874831 ~ 39874947 (+)
XLOC_014220 NA non-coding upstream 583097 39750058 ~ 39752174 (+)
XLOC_014238 CR749767.1 non-coding downstream 610557 40958500 ~ 40958616 (+)
XLOC_014243 NA non-coding downstream 839869 41187812 ~ 41191519 (+)
XLOC_014244 NA non-coding downstream 885865 41233808 ~ 41238528 (+)
XLOC_014252 NA non-coding downstream 1489808 41837751 ~ 41841201 (+)

Expression


Co-expression Network