XLOC_014243


Basic Information

Item Value
gene id XLOC_014243
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41187812 ~ 41191519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030029
TTTTTTCTCAAGTTTTAATAGTACAGAAATTGGCACTCACTTGATTACAAACTGAAATGAAGTTTCATGACCATCCTTTAACACAGTTGCTTTGTTAATACAGGATTGTGTATCAAGAACAcgtcaaaaagaaacaaacaaaaagcagcaGCTGTGATTTCATGAGGACGGCGATGTTCAGTTAATGAAGCTCGTGAGGTATAAATGAATAACATCAACATAGATGCCAGTTCTAGATTATAACTGGATATGTGCAAATGATCTACTTAGCTTGTCTAAATAATTCTCCCATCTCTGAACGAGGAAAATCCATGTTAGCAGAGCAAACTGCCAGCAGCCGAAAGCCACTCAGAGTCTGATAAGTGTCACTTGAATCAGAGCAGCTGCTGCCACTCCAGTTCCCTTAAAATTCATATACAGCTCCTTCACATTGCTTTCAATATTCACAAACATTACAGTCAAAATTAAAACACAacgacaataaaaacaaaactaaaagacACAACTCGCAAAACAACAATCCTGAGATAATAtacttaaataaaaacagaaaggaAAAGAAATGTCTCCTGctatatgcacataaaaatagagAAATGAGTATTTCTTCAGTGTGCTCGTGCtaacaaaataataagaaaacaacTACAGTGCTACACGTTGTTTTTGTTCATACAGTAAACCTGAAATGTGCAGCCAAATGCTGTTGTCACGAACACCATCCTTTCCTAGTTTCTTGGGCTCGCTGCTCGGGATGCACCAATCATCCGCTTCTGTGCTGGTTTGATAGTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030029 True 793 lncRNA 0.37 2 41187812 41191519

Neighbor

gene id symbol gene type direction distance location
XLOC_014242 asb4 coding upstream 5561 41169996 ~ 41182251 (+)
XLOC_014241 ppp1r9a coding upstream 26869 41075488 ~ 41160943 (+)
XLOC_014240 casd1 coding upstream 153588 41006975 ~ 41034224 (+)
XLOC_014239 col1a2 coding upstream 184832 40983221 ~ 41002980 (+)
XLOC_014238 CR749767.1 coding upstream 229196 40958500 ~ 40958616 (+)
XLOC_014244 NA coding downstream 42289 41233808 ~ 41238528 (+)
XLOC_014245 dlx6a coding downstream 228000 41419519 ~ 41467041 (+)
XLOC_014246 ago2 coding downstream 288471 41479990 ~ 41499645 (+)
XLOC_014247 si:ch211-57n23.1 coding downstream 318437 41509956 ~ 41513809 (+)
XLOC_014248 crtc2 coding downstream 329373 41520892 ~ 41540572 (+)
XLOC_014234 NA non-coding upstream 450828 40692428 ~ 40736984 (+)
XLOC_014230 NA non-coding upstream 854718 40328712 ~ 40333094 (+)
XLOC_014224 NA non-coding upstream 1121221 40057836 ~ 40066591 (+)
XLOC_014222 BX957260.1 non-coding upstream 1218354 39927406 ~ 39969458 (+)
XLOC_014252 NA non-coding downstream 646232 41837751 ~ 41841201 (+)
XLOC_014255 NA non-coding downstream 936404 42127923 ~ 42140654 (+)
XLOC_014257 CU896644.3 non-coding downstream 997471 42188990 ~ 42189104 (+)
XLOC_014261 BX571688.1 non-coding downstream 1145798 42337317 ~ 42337431 (+)

Expression


Co-expression Network