XLOC_014248 (crtc2)


Basic Information

Item Value
gene id XLOC_014248
gene name crtc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41520892 ~ 41540572 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028318
AGTAGCTGGGCGTGTGCGCTGCACAGATAACGAATGAGCTTGGCAACGGTGTTTACTACAGCCTTCAGGACTCCATTACCCACAATGCACCGCTCGTCGTTGTCAAAAGTCTTGCTTTCTTGGGTCACTTACCGAACTCTGGCCGTGTCAGCCAGCTTTAATTTTTCTTGTTTGTCGGAATAATGCATTTTTCAGGCGCTGGCCTCGGGGAAATAGGACACGGACAGGGGCCCGGACCCGGACCGACGCCTGGAAGCTGCAATCCGCGCAAATTCAGCGAGAAAATCGCCCTGCACAACCAGCGACAGGCTGAAGAAACCGCAGCTTTTCGAGAGGTTATGATGGACATTAATTCCATCAGGGTTGAAGCTGAGAGAGTTCGGCAAACCAGAGACCCGGTGCCGTATTATGGAGGATCACTACCAAACGTCAATCAGATGTCAAGATGCTCCGTGGAGACACAGGTGTgggattttgatttatttattatagggatagttcacccaaaaactacatttcttcataatttatttgcatttaagtggttcaaaacttttatgagtttcttctgaaaatattttaaagataaaaagcagccattgacatccatagtaggaagtcaatggttgtttcattcttcagtatatcttcatttgtcttcaacagaagaaagaattgaAAACACAGCCTTGatacaagtaaatgatgacaaaatgtcaattttttgagtgaactattccttatAAGTGATACTTCGcccaaatttaaaatgtattcactatttcctcaccctcaagtggttccaaacctttatgagttttttcttctgtcaaacacaaaggaagatattttgaagaatgttaaaaacctgataagcaattactatggaagtcaatggttacaggttttcagcattgatatatttgtgtataacagaaaaaaagaaacttataaagttttgaaacaagtaaaggg
>TCONS_00028319
GTCGTTGTCAAAAGTCTTGCTTTCTTGGGTCACTTACCGAACTCTGGCCGTGTCAGCCAGCTTTAATTTTTCTTGTTTGTCGGAATAATGCATTTTTCAGGCGCTGGCCTCGGGGAAATAGGACACGGACAGGGGCCCGGACCCGGACCGACGCCTGGAAGCTGCAATCCGCGCAAATTCAGCGAGAAAATCGCCCTGCACAACCAGCGACAGGCTGAAGAAACCGCAGCTTTTCGAGAGGTTATGATGGACATTAATTCCATCAGGGTTGAAGCTGAGAGAGTTCGGCAAACCAGAGACCCGGTGCCGTATTATGGAGGATCACTACCAAACGTCAATCAGATGTCAAGATGCTCCGTGGAGACACAGTACCCAAGTTGCCTTACCCAGCAGCTTCTGGAGGCCGATGAGGAATACAGAGATGTCCAGCCCAGTCCTCTCAGCAGGCCTTACAGGAGACATTTTGATAGCGCTCCGTATCTCTCTTCACACCTCTCTCCTCCTCGAGCTCCAGCCTGGAGAAGAAACTGGTCCAGTTGCTCTGCCACTGAGAAGAGCCAGATGGTCCGTCTTCCTCTTACTgctctaaacagAACCAATTCGGACTCGGCCCTCCACACCAGTGTGCGAAACACTCAACTACACGGCCACCTGAAATCTACACAAACCCTAAACACCCAAACCAGACACTGTGGGTTTGCACTTCCTGCTCCACTGATTGAAGAAAATATCCAGGAGGAAACACAGTCTCCTAAACTGAAGAAGTTATCCCCCATGGCCTCATCAGGATGTGAAACACCCGTTGTTCATTTCCCATCACCTGATCAGCAGGTCTCTTCTCTCCCCGTCCCGTCAGCTCTCAGTACGAGCGGGTCTCTTCCGGATCTCTCCAGCCTTCATCTGCCTTCACCACTGCCTGGCGGACTGGAGTCTGAGCCTCAGAGTGGAACAAATCTTTTGAACAGCACTTCTACACACCCTGACATCATGGCAGACTTCAGCTTACCAGGTCTGTCTTCACCCCTTCAGGCGTCTTTAAGCAACCCTCTGCTCCAGTCTTCTTCGCTCAGCAATCCCAGCATCCAGAGCTGTCTCAGCAGCCTCTCCCTGCCCAGTTCCCTGAGCTCCGTGTCGTCCCGTCTGTCCCTCAGCAACTCGTCCCTGCAGTCCTCGCTCAGCAACCAGTCCCTGCGCTCCTCGCTCAGCAGCTCCTCACTAAGCAACCAGTCCGTCCAGTCGTCCGCAAGCCGCTGCAGCATCAGCAGTGGAATCGGAGGATCCGGgtcctgctcctcctcctctgtCTCTGGGTCTCCTCGTGTCGCTGGCGGGACGTCCCGGAAGAGAGCCCAGCTCAGCCCGCTCATCGTGCCAAGTGGAGGAGAGTCCCGCTGGCAGCATCCCAAACAGTTTTCACCCACAGCGTCTCCAACTCTGCCTTCTATAGCACAGGGTGCTCTGCTAAACTCCTGCAAAGTCCATAAGGAGACCAAACCACCAGCATATCCCTGCTCTCATCACATCAGACCCGCGCCTCCGCTTTCCCATCAGCCACTGCGCCAGTACTTCCATCCGGAGCCACAGTATCAGTCTATCCCAGAGCTGGAGCAGTGGATTCACAACgaacatcagcaaacacacaatCAGAGACAAAAACACAGCCCAGTTCacaaacacccacaaacacatGCTAAATTTGAGCCGCACTTACAGTATCCACCACAGCAAGCGTTTACCCAGCATGCACCGCTCTACCCACAGAtccagcatcatcatcatcatcaagagCAGCAGAATCAGTGGCATCAGCAGAACCAGTATCAAAATCAACAGCTTCATCAAAACACAGCGATCCAGTGTCCTGATCAAGAGCAAAACTGGAGTCATTTCACAGGGGTGCATGAGCTGCAGCACACGCAGGTGAAGCGCAGATACTGCATGCAGACGCAGGATGACACAAAACCACCGTCTGAGCTCACCAATCCAGAGACTCCAGCAGCGGTCTCTCACTGTAAAGAGACGGAGCAGAATCCAGGGTCACAGGATAAAGGTTTTGAGCTGAACAAGGAGTCGTATGTCGGCTTACATCTGACCCCTAGCCAGGCAAAAGCCCTTTCCCAGCAGCTCGGAGCTCTACAGAAGGAGCCTCTAGGTGGCAGCAGAGGGTCAGAGCTTCACTGTGAAGCTGCAGAAAGCAGAGAACAGCAGAACCAGAGCTGCAGCGCTGGAGAAACACACAATGCTTTCAACATCAACTTATCTGACCCGTCATCCTGGCTGGACCAGGACATCTCAGGCCTGCCGGACTCCGTTCTGGAGTTTGACTTAGAAACCTTTGGTCTGGACAGTAATTTGGGTTGGCCATGAACGTGTCATACAAGTGCACTAAAATACGCAGTAATTCAGACAAGTAcctttttaaagaatgttttttgCCAGTTAACTTGAAATGTAGCCTCTAGAACGTTTTCACACCTGGTTTGTTTGAGTACCTGAACACATTTCTttctttgttcagttttttttaggAATATTTGAACATGGAAATTACATTTGCACCAAAATAATCAACGAATGTGGTGGGGAGAGGTGcgccagtcactgaatccagcatattgGGGTTCTCAACTGTCCGCCACATTCTGTCTTATATTATGCACTTTGTTTGTCATCAAGTTAACTCAAATGTcggcattctgtatttagctttttgcttgtaTAGTGGCTCTGAAGTGTCAAAACACCTCCTAAAAGGGAAAAAATCAAACccatttcatttttttcccccacGGACGATTGTTTCAGAGGGAGTGTGTCAATTAGATTCACACATAAGtgatgtcaaatttattttttaatgtgcgaAAAATTATGGATGAAAATGTCAGATTGAGTGTGCAATAACCTTCactctttttttaaaggacattctgggatttttatgGACCACAGAGAGTTAGGACCTTGATATTATTGTTAAATTCGAAATGTgctgctcactgagcagtatagagtccccttcactatactggggcgttaggatccacacagattgcaggttgagcgcctcctgctggcctcaccaacaccactcctggcagcaacctagctttcccatgtggtctttcatccaggtactgaccagatgcagccctgcttagcttcagtgggttaCCATGTGAGAGTTTCAGAGAGCTAGCTTCCATCTTTTAAGCACATGTGACTTTATGAAACATTTTGATGCACTTTTTAAATGTCACCTGGTAAAAGCAAACTGAACCAAGAGGAAAATGCAACTTTGTAACATATTAAGTAGCTTTCTGGTAACAAAGCAAACAATCTACAGGTCTGAAAACGCTCTTATAGTCTAAtagaatgtaaataaaaatggctTAAAGCTCCTTTAAgggaacaaataaaaaaacgtttttgcacacagagaggTCTTAGGTCGCAGGTCTATGTGCCTTAATATGAAGTTTTGgttctatttaattataaatgGAGTAGATTGTTTATGTATTGATTCATAGGGtgcatatttacacattttaatatagcatagAATAACTAGTATATGAAAATATTGTAACTATTATAACCTCAAAATATAGTTTTGAAGGTGAATGTAATATTATAAAGTACTCTTTCAAGTTAAGAACAAAACTAAATATAGGTTTAATCATattaagtctttattttacagtgtttgcttgtttttttttaaatcggggTCGTTTTTGTGACTTTGATAAGTGTTTCTCCACACCTGCCTTTCAATTGGTATATAATTTTGATGCAGTTTTATCTCAGAAATATATTCATAATGcagtttaattatattttcataCTGGTTTTCCTTTATCACTCTCTGGTAGAGGTGATGTTATTTTTCAGTATTTGTGTTCAGTATCAAATCTTTTCTCAGTATGCGTATTGGAATACAGTTTCCTGACAGGATTATTCATATAGTTTAAACCGAGAAACACGTGTAAATTCCTGAAGTATTGCAATTAAAAGTGGACTAATACATTC

Function

symbol description
crtc2 Predicted to enable cAMP response element binding protein binding activity. Predicted to be involved in positive regulation of CREB transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein homotetramerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human CRTC2 (CREB regulated transcription coactivator 2).

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04152 AMPK signaling pathway
ko04922 Glucagon signaling pathway
ko05166 Human T-cell leukemia virus 1 infection
ko04931 Insulin resistance

ZFIN:

id description
ZDB-GENE-030131-2214 Predicted to enable cAMP response element binding protein binding activity. Predicted to be involved in positive regulation of CREB transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein homotetramerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human CRTC2 (CREB regulated transcription coactivator 2).

Ensembl:

ensembl_id ENSDARG00000074910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028318 False 975 mRNA 0.40 2 41520892 41524391
TCONS_00028319 True 4035 mRNA 0.46 14 41520987 41540572

Neighbor

gene id symbol gene type direction distance location
XLOC_014247 si:ch211-57n23.1 coding upstream 7083 41509956 ~ 41513809 (+)
XLOC_014246 ago2 coding upstream 21247 41479990 ~ 41499645 (+)
XLOC_014245 dlx6a coding upstream 53851 41419519 ~ 41467041 (+)
XLOC_014244 NA coding upstream 282364 41233808 ~ 41238528 (+)
XLOC_014243 NA coding upstream 329373 41187812 ~ 41191519 (+)
XLOC_014249 si:ch211-57n23.4 coding downstream 10763 41551335 ~ 41597464 (+)
XLOC_014250 gatad2b coding downstream 161088 41701660 ~ 41724246 (+)
XLOC_014251 tinagl1 coding downstream 228563 41769135 ~ 41829721 (+)
XLOC_014252 NA coding downstream 297179 41837751 ~ 41841201 (+)
XLOC_014253 si:ch211-13c6.2 coding downstream 506855 42047427 ~ 42068989 (+)
XLOC_014238 CR749767.1 non-coding upstream 562276 40958500 ~ 40958616 (+)
XLOC_014234 NA non-coding upstream 783908 40692428 ~ 40736984 (+)
XLOC_014230 NA non-coding upstream 1187798 40328712 ~ 40333094 (+)
XLOC_014255 NA non-coding downstream 587351 42127923 ~ 42140654 (+)
XLOC_014257 CU896644.3 non-coding downstream 648418 42188990 ~ 42189104 (+)
XLOC_014261 BX571688.1 non-coding downstream 796745 42337317 ~ 42337431 (+)
XLOC_014264 BX950855.1 non-coding downstream 965402 42505974 ~ 42516134 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02183906_02194821 NA coding CI01000054 null 2183719 ~ 2194821 (-)