XLOC_014253 (si:ch211-13c6.2)


Basic Information

Item Value
gene id XLOC_014253
gene name si:ch211-13c6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42047427 ~ 42068989 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028324
GAGAGCGGCCTAACCTAAAAATTACGTTTCACcaatttgttgttgttattgtcatCGTTTTTTGCATTATcaagtaaaatatattaatatcagCAGCATTAAAGTGTTAATTCGCTAAAATACAGCTTATTCGACGTTGCGGACAGGCGTAATAGTAGTTTGCAAAGATGACTGATTTACTGACAGTGTACGACGACGACCAGGCCAACTCTTTCATTGACTGCATGATCTGCGAGAAAAAAATAAGGGGGGACACCAATTACAAAATCCACGTGACATCAATGCAACACTTAAAGAAAGAGGACGCCCTTGTTGCGCAGGGACAGATTCCGAGACAGCCTTCAATGCCGGAATGGAAAGACATTAAACAATATTTGGAATATCTTCATCTTGATGAGCCCATCATTGGTCTCAACTCTCTGGTGCAGATACCTGATCATGTCACTGAGGATGGCAAAAACGTGCTTAAGTACAAATGCCGAATGTGTTTTGTGGAGATGGACCTGTACAGTATGGTGACGCATATTGTTGGACGCAAGCACAGACAAAAATATTTGGAGCTGAAAAGGCCAGACTTGGTGACCTGGAATGACAATAATCTGAAACAGCCGGGTCTCGTGGTCAGAGCCAAAGCTGCAGTCGTGGAGAAGCACGAGGGATGGGGAACCCCAGAGCCACTCAAGCAACCCAAGGTTTACGAAGGACTTAATTTACGGCCCagtgttcaacaacaacaacaaccctaCTATGGACAAGATGTGCATAGGTCAGCATCTTTGGATGTTTCTAAACAGACATATGTGAGTGAAGAGCAAGAAGGAGTATCCTATTACATTGATGAAAAGTACGGGCGTCAGCCATGCCCACAAGAAAACTGGCATGAGAGAGCATACGAAGAAACCGACCCTGGAGGAAGACCCTCACGAGAAGATCTGGGCAGAGGGAGACTTCGAGAAGAGTACGAAAGAGAACCGTACTCCAGAGCTGACAGACATGTGCCTATAGACGTCCAAGAGAAAACTTATTATGAAGGCGTGCCAAAAAACCGCTTCAATGATAAAGACCTGCGAGTCCATCAACCCGGAGGGTCGCATTATCAAAAAGAGCACATCCACAGCAGTCAGTATGGCGCTTACGATGACAGAAAGTCTGCTGGAAATCCAGTGCCAATGCATGGAAGAAGCTTGCATGACGAGGGGAAGAGGGGGACTGTCAGGGAAATGCACAGCAGGTCTTGGGACAAAGCAAGTGAGATGCAGGGATACTCCCATATGCATGAGCCAAATGCATATTCGATGGAAGACATCCCGGCGAAAAGGAAAAAGAAGAGCCGATTCTCTGACGCAACTGCTGAGGAAATTGCTTTCGCGCATATGAGACATTCTAATAAACATATTCCCAAAGAGCAGACAAGAGGACAACCAGGTAGAGGAGCGCCGGATAGAGGAGCTCCAGCTAGAGGAGAGCCTGTTAGAGGAGCACTGGATAGAGGACCAGCAGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGCGGCGGTAAGAGGAGCACCGGTAAGAGGAGAGCTGGTTAGAGCAAATCCTCTGGTAACACTGCCACAAAACCCCTTTTGCTCTATGTAAACAGCAAGTTCagtataaaattttatatttttaaagtagaCTACATTGAAATTATAGCAGTTTAGAgttaactttcattcattcattcattcattttcttttcgacttagtccctttattaatccggggtcgccacagcggaataaaccgccaacttatcctgcacctgttttaagcagcggatgcccttccagctgcaacccatctctgggaaccatccatacacactcactcacagtcATActctaaagacaatttagcctacccaattcacctgtaccgcatgtctttggactgtgagggaaaccggagaacccggaggtaacccacgcgcacgaggggagaacatgcaaattccacacagaaacggcatctgacccagccgaggctcgaactagcgaccttgctgtgaggcgacagcactacctactgcggcaccGCATTATCCACTTTCAAAtatcaaatttattaaattctttGAACATGACTGTTTAAAACAGTCTACATTGAAATGACAAGTAAAATAAGGACTTTTATGGTGCTGTATATCCTGGGGGTGTGAAGGTGCTtggtttaaaattatttgtgatttaaaaagtcTTTGATTTTGGTGTCCATGAAAGAGTGGGaactagggctgggccgataaacaatgTTATATCGAATCGCGATAAAATTTATGTTGAAAACAATAAGCTCTGGACTCTATATTGATCCAAGAGTCAAagacacagcagaaatgtgcaacaatgggaatctagaagaTTGTTGATATCAGAGATGCACTGAATTTTTGGCCA
>TCONS_00028325
GAGAGCGGCCTAACCTAAAAATTACGTTTCACcaatttgttgttgttattgtcatCGTTTTTTGCATTATcaagtaaaatatattaatatcagCAGCATTAAAGTGTTAATTCGCTAAAATACAGCTTATTCGACGTTGCGGACAGGCGTAATAGTAGTTTGCAAAGATGACTGATTTACTGACAGTGTACGACGACGACCAGGCCAACTCTTTCATTGACTGCATGATCTGCGAGAAAAAAATAAGGGGGGACACCAATTACAAAATCCACGTGACATCAATGCAACACTTAAAGAAAGAGGACGCCCTTGTTGCGCAGGGACAGATTCCGAGACAGCCTTCAATGCCGGAATGGAAAGACATTAAACAATATTTGGAATATCTTCATCTTGATGAGCCCATCATTGGTCTCAACTCTCTGGTGCAGATACCTGATCATGTCACTGAGGATGGCAAAAACGTGCTTAAGTACAAATGCCGAATGTGTTTTGTGGAGATGGACCTGTACAGTATGGTGACGCATATTGTTGGACGCAAGCACAGACAAAAATATTTGGAGCTGAAAAGGCCAGACTTGGTGACCTGGAATGACAATAATCTGAAACAGCCGGGTCTCGTGGTCAGAGCCAAAGCTGCAGTCGTGGAGAAGCACGAGGGATGGGGAACCCCAGAGCCACTCAAGCAACCCAAGGTTTACGAAGGACTTAATTTACGGCCCagtgttcaacaacaacaacaaccctaCTATGGACAAGATGTGCATAGGTCAGCATCTTTGGATGTTTCTAAACAGACATATGTGAGTGAAGAGCAAGAAGGAGTATCCTATTACATTGATGAAAAGTACGGGCGTCAGCCATGCCCACAAGAAAACTGGCATGAGAGAGCATACGAAGAAACCGACCCTGGAGGAAGACCCTCACGAGAAGATCTGGGCAGAGGGAGACTTCGAGAAGAGTACGAAAGAGAACCGTACTCCAGAGCTGACAGACATGTGCCTATAGACGTCCAAGAGAAAACTTATTATGAAGGCGTGCCAAAAAACCGCTTCAATGATAAAGACCTGCGAGTCCATCAACCCGGAGGGTCGCATTATCAAAAAGAGCACATCCACAGCAGTCAGTATGGCGCTTACGATGACAGAAAGTCTGCTGGAAATCCAGTGCCAATGCATGGAAGAAGCTTGCATGACGAGGGGAAGAGGGGGACTGTCAGGGAAATGCACAGCAGGTCTTGGGACAAAGCAAGTGAGATGCAGGGATACTCCCATATGCATGAGCCAAATGCATATTCGATGGAAGACATCCCGGCGAAAAGGAAAAAGAAGAGCCGATTCTCTGACGCAACTGCTGAGGAAATTGCTTTCGCGCATATGAGACATTCTAATAAACATATTCCCAAAGAGCAGACAAGAGGACAACCAGGTAGAGGAGCGCCGGATAGAGGAGCTCCAGCTAGAGGAGAGCCTGTTAGAGGAGCACTGGATAGAGGACCAGCAGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGCGGCGGTAAGAGGAGCACCGTCGAACCAGTTTGTGGATTCTGGAAGTGCATCACATCTTAATCAGAAAGATGACAGTGTGCTGGACATATTTAACAACATCGAGATCGAAAATATGGAGGATGCCAGAATACTTAAAGAGAAGCTGTGCACGGTTTTAAAAGAGTTTCAGGCTGCTAAAACCGAACGAGTTGTGGGCCATACTTCACATACACAATCAGTCAGTGACCACCGAGGGGTAAATCCGACAGACCACCGCAGAGATGATCCAGATAGCATGTACCTGCAAAACCGAGGTTACCAAGAGCCCAGACGATACGACGACGATCGCAGAGGTTACCAAGAATATAGAGATGACCTAAGAGAGTTTCGACAAGATGAGGATCCCAGAGCGCCCAGACATTACGCTGATTATCCCAGCAGTCATCCGGAAGCAAGACCGTATGATGATGACCCCAGAGGATTCCCAAAACCAAGGGGACCAGAGAACCCCCAAAGTCAACCAGAGAGGAGACGTTACGATGATAATCTCAGACAAAAAGAGCCACGATATGAAGAGTATCCACAAGCTTTAAGAGTGGATGCGGATCTGAGAAGTTCTCAAGAGGCTAGATATTACGAAGACTATTACAGAGGTTACGAAAGTATGGAGTCTGAACGAGATTGGGAGCGTTCTCAAGAGAGCTTTGGAAAGCCTCCTGGTCACTTCAAATCACATTCTCTACAAGACGGCGGGAGGATGTATGTTGGAAGAGGACAGCAGAGAGCCCATCAGGGCAATCATCAGCCTGTCACCGAAGAGCTTTACGACCCGTTCCAGCCGTCGTCTTCTCCACCTCCAGAATCCAGCTCCTCCACCAGCCTGGACAAGATCGCATCGACTCTTCTGGAGCTCGTCTCTCGTAGATAGTTTTGAATCAGATACTTCTACATAATATTTGATGGTTGTATGTTTCTGTGATTGTTTCATTCAGCATCTTTCAGTAGACGAAATACTGTAGTTTTattacttgtattttatttttcatacttCCATCGCTTTTCACTATTTGTAGCCTATGTGAGGGGTTTTCAATTTAGTTTGTGTATTGTGAGGTAGAAATTAATTTTGTCTAAATGGTTTGATTAAAATattgttgaggaaataaatcattCAACCAaa
>TCONS_00028326
CAGGGATACTCCCATATGCATGAGCCAAATGCATATTCGATGGAAGACATCCCGGCGAAAAGGAAAAAGAAGAGCCGATTCTCTGACGCAACTGCTGAGGAAATTGCTTTCGCGCATATGAGACATTCTAATAAACATATTCCCAAAGAGCAGACAAGAGGACAACCAGGTAGAGGAGCGCCGGATAGAGGAGCTCCAGCTAGAGGAGAGCCTGTTAGAGGAGCACTGGATAGAGGACCAGCAGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGCGGCGGTAAGAGGAGCACCGTCGAACCAGTTTGTGGATTCTGGAAGTGCATCACATCTTAATCAGAAAGATGACAGTGTGCTGGACATATTTAACAACATCGAGATCGAAAATATGGAGGATGCCAGAATACTTAAAGAGAAGCTGTGCACGGTTTTAAAAGAGTTTCAGGCTGCTAAAACCGAACGAGTTGTGGGCCATACTTCACATACACAATCAGTCAGTGACCACCGAGGGGTAAATCCGACAGACCACCGCAGAGATGATCCAGATAGCATGTACCTGCAAAACCGAGGTTACCAAGAGCCCAGACGATACGACGACGATCGCAGAGGTTACCAAGAATATAGAGATGACCTAAGAGAGTTTCGACAAGATGAGGATCCCAGAGCGCCCAGACATTACGCTGATTATCCCAGCAGTCATCCGGAAGCAAGACCGTATGATGATGACCCCAGAGGATTCCCAAAACCAAGGGGACCAGAGAACCCCCAAAGTCAACCAGAGAGGAGACGTTACGATGATAATCTCAGACAAAAAGAGCCACGATATGAAGAGTATCCACAAGCTTTAAGAGTGGATGCGGATCTGAGAAGTTCTCAAGAGGCTAGATATTACGAAGACTATTACAGAGGTTACGAAAGTATGGAGTCTGAACGAGATTGGGAGCGTTCTCAAGAGAGCTTTGGAAAGCCTCCTGGTCACTTCAAATCACATTCTCTACAAGACGGCGGGAGGATGTATGTTGGAAGAGGACAGCAGAGAGCCCATCAGGGCAATCATCAGCCTGTCACCGAAGAGCTTTACGACCCGTTCCAGCCGTCGTCTTCTCCACCTCCAGAATCCAGCTCCTCCACCAGCCTGGACAAGATCGCATCGACTCTTCTGGAGCTCGTCTCTCGTAGATAGTTTTGAATCAGATACTTCTACATAATATTTGATGGTTGTATGTTTCTGTGATTGTTTCATTCAGCATCTTTCAGTAGACGAAATACTGTAGTTTTattacttgtattttatttttcatacttCCATCGCTTTTCACTATTTGTAGCCTATGTGAGGGGTTTTCAATTTAGTTTGTGTATTGTGAGGTAGAAATTAATTTTGTCTAAATGGTTTGATTAAAATattgttgaggaaataaatcattCAACC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-666 No description available

Ensembl:

ensembl_id ENSDARG00000027738

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028324 False 2578 mRNA 0.46 10 42047427 42064436
TCONS_00028325 False 2849 mRNA 0.46 14 42047427 42068989
TCONS_00028326 True 1590 mRNA 0.47 6 42061699 42068986

Neighbor

gene id symbol gene type direction distance location
XLOC_014252 NA coding upstream 206226 41837751 ~ 41841201 (+)
XLOC_014251 tinagl1 coding upstream 217706 41769135 ~ 41829721 (+)
XLOC_014250 gatad2b coding upstream 323181 41701660 ~ 41724246 (+)
XLOC_014249 si:ch211-57n23.4 coding upstream 449963 41551335 ~ 41597464 (+)
XLOC_014248 crtc2 coding upstream 506855 41520892 ~ 41540572 (+)
XLOC_014254 nfyc coding downstream 2044 42071033 ~ 42119699 (+)
XLOC_014255 NA coding downstream 58934 42127923 ~ 42140654 (+)
XLOC_014256 kcnq4 coding downstream 73392 42142381 ~ 42218821 (+)
XLOC_014257 CU896644.3 coding downstream 120001 42188990 ~ 42189104 (+)
XLOC_014258 CU896644.1 coding downstream 150176 42219165 ~ 42220434 (+)
XLOC_014244 NA non-coding upstream 808899 41233808 ~ 41238528 (+)
XLOC_014243 NA non-coding upstream 855908 41187812 ~ 41191519 (+)
XLOC_014238 CR749767.1 non-coding upstream 1088811 40958500 ~ 40958616 (+)
XLOC_014234 NA non-coding upstream 1310443 40692428 ~ 40736984 (+)
XLOC_014261 BX571688.1 non-coding downstream 268328 42337317 ~ 42337431 (+)
XLOC_014264 BX950855.1 non-coding downstream 436985 42505974 ~ 42516134 (+)
XLOC_014265 NA non-coding downstream 449588 42518577 ~ 42547204 (+)

Expression


Co-expression Network