RNA id: TCONS_00028324


Basic Information

Item Value
RNA id TCONS_00028324
length 2578
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_014253
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42047427 ~ 42068989 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGCGGCCTAACCTAAAAATTACGTTTCACcaatttgttgttgttattgtcatCGTTTTTTGCATTATcaagtaaaatatattaatatcagCAGCATTAAAGTGTTAATTCGCTAAAATACAGCTTATTCGACGTTGCGGACAGGCGTAATAGTAGTTTGCAAAGATGACTGATTTACTGACAGTGTACGACGACGACCAGGCCAACTCTTTCATTGACTGCATGATCTGCGAGAAAAAAATAAGGGGGGACACCAATTACAAAATCCACGTGACATCAATGCAACACTTAAAGAAAGAGGACGCCCTTGTTGCGCAGGGACAGATTCCGAGACAGCCTTCAATGCCGGAATGGAAAGACATTAAACAATATTTGGAATATCTTCATCTTGATGAGCCCATCATTGGTCTCAACTCTCTGGTGCAGATACCTGATCATGTCACTGAGGATGGCAAAAACGTGCTTAAGTACAAATGCCGAATGTGTTTTGTGGAGATGGACCTGTACAGTATGGTGACGCATATTGTTGGACGCAAGCACAGACAAAAATATTTGGAGCTGAAAAGGCCAGACTTGGTGACCTGGAATGACAATAATCTGAAACAGCCGGGTCTCGTGGTCAGAGCCAAAGCTGCAGTCGTGGAGAAGCACGAGGGATGGGGAACCCCAGAGCCACTCAAGCAACCCAAGGTTTACGAAGGACTTAATTTACGGCCCagtgttcaacaacaacaacaaccctaCTATGGACAAGATGTGCATAGGTCAGCATCTTTGGATGTTTCTAAACAGACATATGTGAGTGAAGAGCAAGAAGGAGTATCCTATTACATTGATGAAAAGTACGGGCGTCAGCCATGCCCACAAGAAAACTGGCATGAGAGAGCATACGAAGAAACCGACCCTGGAGGAAGACCCTCACGAGAAGATCTGGGCAGAGGGAGACTTCGAGAAGAGTACGAAAGAGAACCGTACTCCAGAGCTGACAGACATGTGCCTATAGACGTCCAAGAGAAAACTTATTATGAAGGCGTGCCAAAAAACCGCTTCAATGATAAAGACCTGCGAGTCCATCAACCCGGAGGGTCGCATTATCAAAAAGAGCACATCCACAGCAGTCAGTATGGCGCTTACGATGACAGAAAGTCTGCTGGAAATCCAGTGCCAATGCATGGAAGAAGCTTGCATGACGAGGGGAAGAGGGGGACTGTCAGGGAAATGCACAGCAGGTCTTGGGACAAAGCAAGTGAGATGCAGGGATACTCCCATATGCATGAGCCAAATGCATATTCGATGGAAGACATCCCGGCGAAAAGGAAAAAGAAGAGCCGATTCTCTGACGCAACTGCTGAGGAAATTGCTTTCGCGCATATGAGACATTCTAATAAACATATTCCCAAAGAGCAGACAAGAGGACAACCAGGTAGAGGAGCGCCGGATAGAGGAGCTCCAGCTAGAGGAGAGCCTGTTAGAGGAGCACTGGATAGAGGACCAGCAGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCACCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGAGCCCGTTAGAGGAGCACTGGATAGAGGACCCCCGGTTAGAGGAGCGGCGGTAAGAGGAGCACCGGTAAGAGGAGAGCTGGTTAGAGCAAATCCTCTGGTAACACTGCCACAAAACCCCTTTTGCTCTATGTAAACAGCAAGTTCagtataaaattttatatttttaaagtagaCTACATTGAAATTATAGCAGTTTAGAgttaactttcattcattcattcattcattttcttttcgacttagtccctttattaatccggggtcgccacagcggaataaaccgccaacttatcctgcacctgttttaagcagcggatgcccttccagctgcaacccatctctgggaaccatccatacacactcactcacagtcATActctaaagacaatttagcctacccaattcacctgtaccgcatgtctttggactgtgagggaaaccggagaacccggaggtaacccacgcgcacgaggggagaacatgcaaattccacacagaaacggcatctgacccagccgaggctcgaactagcgaccttgctgtgaggcgacagcactacctactgcggcaccGCATTATCCACTTTCAAAtatcaaatttattaaattctttGAACATGACTGTTTAAAACAGTCTACATTGAAATGACAAGTAAAATAAGGACTTTTATGGTGCTGTATATCCTGGGGGTGTGAAGGTGCTtggtttaaaattatttgtgatttaaaaagtcTTTGATTTTGGTGTCCATGAAAGAGTGGGaactagggctgggccgataaacaatgTTATATCGAATCGCGATAAAATTTATGTTGAAAACAATAAGCTCTGGACTCTATATTGATCCAAGAGTCAAagacacagcagaaatgtgcaacaatgggaatctagaagaTTGTTGATATCAGAGATGCACTGAATTTTTGGCCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-666 No description available

Ensembl:

ensembl_id ENSDART00000180225

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030031 lncRNA upstream 206226 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA upstream 206226 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030030 lncRNA upstream 808899 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030029 lncRNA upstream 855908 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030028 lncRNA upstream 1310443 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00030033 lncRNA downstream 63487 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00028338 lncRNA downstream 166225 42230661 ~ 42231640 (+) False XLOC_014259
TCONS_00028346 lncRNA downstream 441538 42505974 ~ 42516134 (+) False XLOC_014264
TCONS_00030034 lncRNA downstream 441539 42505975 ~ 42508177 (+) False XLOC_014264
TCONS_00030035 lncRNA downstream 441551 42505987 ~ 42508177 (+) True XLOC_014264
TCONS_00028323 mRNA upstream 217706 41769135 ~ 41829721 (+) True XLOC_014251
TCONS_00028322 mRNA upstream 323181 41701660 ~ 41724246 (+) True XLOC_014250
TCONS_00028321 mRNA upstream 449963 41551543 ~ 41597464 (+) True XLOC_014249
TCONS_00028320 mRNA upstream 471824 41551335 ~ 41575603 (+) False XLOC_014249
TCONS_00028319 mRNA upstream 506855 41520987 ~ 41540572 (+) True XLOC_014248
TCONS_00028328 mRNA downstream 6597 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028327 mRNA downstream 6597 42071033 ~ 42119699 (+) False XLOC_014254
TCONS_00028329 mRNA downstream 7378 42071814 ~ 42118592 (+) False XLOC_014254
TCONS_00028330 mRNA downstream 7444 42071880 ~ 42118592 (+) False XLOC_014254
TCONS_00028331 mRNA downstream 22426 42086862 ~ 42117631 (+) True XLOC_014254
TCONS_00028303 other upstream 1088811 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 1702690 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 1920663 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 1992036 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 2172480 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028333 other downstream 124554 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 272881 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 668252 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 850983 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 1013308 43077744 ~ 43077879 (+) True XLOC_014279

Expression Profile

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